BtaINT0145002 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37246467-37249623:-
Coord C1 exon
chr2:37249448-37249623
Coord A exon
chr2:37246600-37249447
Coord C2 exon
chr2:37246467-37246599
Length
2848 bp
Sequences
Splice sites
5' ss Seq
ACCGTAGGT
5' ss Score
6.05
3' ss Seq
CCTGTGCGCTCTCTCTGCAGGTG
3' ss Score
14.68
Exon sequences
Seq C1 exon
GTGCCACCCTTTCTTCTCTGGACAAGGAGGGTCTGTCGGCATTAAGCTGGGCATGTCTGAAAGGTCACAGGGCTGTTGTCCAGTTCCTAGTGGAGGAGGGAGCCGAGATCGACCAGACGGACAAGAACGGCCGCAGCCCCCTGGACCTGGCCGCCTTCTACGGCGACGCGGAGACC
Seq A exon
GTAGGTACCGCGGTGGCTGTGCTCCCCACCCGCGCCAGGCGGGCCGGGCCGCCTACTGATCTGGGATCCGAGCCATCCCCAAGTGTGTGTGACGCCGCCCCAGCGTGGCCGGGCTGTTTGCGTGTGCCGTGGGGTGGCTTTCGTTTTCTGCTAGTTCTGTGGCATGCGGTCTGTTTCAGAACTGGAGTCAAGATTTTGATAGATTCGTAAAAGCTTAAAATTCCATGATGACAGACTGCACTCACATACGTGGATGCAACACGCATCCGTGAGTATGTGTACGCACCCGCATATGTAGCTTTATTTTCTTACAATTTTCATAGAAATAGAATTCCTGTGTAGTTCATTGAAAAATCACTTATATATGTGAGAAATTACTGCTCAAATAATTAGTTGGTTTGCTTTTAAATCAATGCAGCTTTGTCTTGAAATAATATAAAATGCTTTGGGCACTGTCTTTATCTTTGTCAAATGCCTGAGTCCCTAACTGAGGAATGAAGGGATAAAACCTTAATAAATGAAAAACCACAAAATGTCTTTCAGGGAAAAACCCACATCTTTGTCAGTCTCTACATCCCATGTACCAAGCAGGTGTTGGAGGAATGTTCAGCTCCTTGAGAATGGTCATTTATGAATAGTTACGTGTGTCTAACATGAGAATTAGACAGACAGGTACTGTGTTGCTGGGAGCTGTGGACCTTGGGGCGGAAGCGATCCTGCACATCTGTGCCTGATGGTTTTAAAAGGCAATGATATTGGAATTAAGTGGTCTCAATTTCCTGGACATTATAAATTGTACATAAGTGTCAATTTCCCCAAAACAGCTATTTAACTAAACCTCACATCTCCACACTTGTCTTTCTCCGTTTTTGTTACCTTACCAGATCCTCTAGTTTATCAACATTAGGGAAGAGTGAAGGAGCTTAGTATTCTGTCATTAAAAAAAAAAAAAATTGGGTATAAACACATAACATAAAATTTACCATCGAAACCATTCCTACGTGAAGACTTCAGTACTGCTACACACACGTCACGATGCTGTGCAGCCAGAGCCCAGGCTCCTTTTCTGTCGGGTAAGACTGAAACAGCGCCCACTGAACAGTAAGCCCTTGTTACCACCCCTCACCCCCAGCCTCCGGCAGCCGTCTTTCTATCAGTACTTCTCTTTCTCTGAAGGACAGCGTTTGGTCCTTCATACAAGTGGAATCATACAATATTTGTCTTCTTGTGACTGACTGATTTCACTCAGCATTGTGTCTTCTGGGTTTGTCCATGTCATAGCACATGTCAGGATGTCCTCAAGGCTGAGTAATATTCCGCTTATGTATTTGCCTCATGTTGTTAATCCATTCATCCACTCGGTGGGCATGTGCACTGCTTCCGCCTCTTGGCTATTAGGAATAGTGCTGTTACGAACATGGGTATGCACATATTTCACCGAGATCCTGCAAAGTCTTGGAGATCTATCATTCTCTTGAGTAGATACCCAGAAGTAAGAGTGCTGAGTCAAGCGGTAATACTGTCTTAATTTTTTGAGGAACCTTCATACTGTGTGCATAGTGGTCACATCCTATCAGCAATGCGCATGGGTAACTATTTCTCCATATCCTCTCTAACACTTGCTTTCTGTTTCATTCTGTCCTTTTTAACAGTTCAGTTCAGTTGCTCAGTCGTGTCCGACTCTTTGCAACCCCATGAATTGCAGCACCCCAGGCCTCCCTGTCCATTTAACAGTAGACATCCTAATAGTTAATAACTTGTTTTGTGTCTTTGATTTGCTGTTCCCTAGTGATGAACATTTTCTCACATGTTTATTGGCCATCTGTATGTCATCTTTGGAAAAATGTCTGTTCAGATACTTTGCCTATTTTTTCACTTTTATTGAAGTATAGTTGATTTACAGTGTGCTAACTTCTGTGCAGAACGACCCAGTTATACATATATATATACCTTTTAATATTCTTTCCATTATGGCTTATCACAGCTTTGCCTGTTTTTAAATTGGGTTATTTGAGGCTTTTGTTGTTGGGTTGTAGGAGTTCTTTACATATCCTGGATATTAATCCCTCTAGTGTGTTATTTTGTGAACAGCTGGTATACTGATAAGATGTATCAGATCCACATGAAACTCTAAGCAGTCTACAGACTTTCCCAGTGAGTGGCTCAGTTTTCCTGGCAATTTCTGTTTCTGTCAAACCACAGTGTGGTTTTCCCACTTGTTCTCTGTTTAGCCCAAGTGATAGCTGTTTTATCACATCAAGTCAGTCTTGGTAGCATGCTCTTAAGCTTTCCATCTTTACAGTCTCTGTATTCAAATCTCTTTCCTATGCCTTAAAAGTGAATTATTATTGGGTCTGGCAGATTCCAACCTTTTCAGGTTCTGTATCCAGGCTGTGTGGATCTGAGTATTTCTGGAGTGCCTGTTGCCATGACCTGGTAGCTAGTTGGAGCTATGGCAGAAGCCTGCCTCCTAATAAGTAATTGGAGATGAAAAAGTGACTGTATCTTATCTCTGTGGCCTGGGAAGTAGGATGCGAAGACAGGTGAAGGCGTGCGTGTACCTGTCTGTGGTCTGGGTGACGGACACACTCCCCACCTGCTTCCGGAGCATCTGTCTGCCTTCCTCATTGCCAACATCACAGTCACTTTAGCAGAGCAGGTTTGAGCTGTGGATTGCAATTTTTCTGCTTTGTTCTGTGTCAACTTTATTTCCATTCTAGGATCCCATTAGGCCAGAGGCATCTGAGATCAGAGTAAGATCGCCAGCTTCTTTCTACACCAGCTGCGGCCTCGGGTAGGCGAGGGCTCCTCTGCCTGCGCCCTCAGGGCCTGTGCGCTCTCTCTGCAG
Seq C2 exon
GTGCTGTATCTGGTGGACAAGGGGGCTGTGATTGAGCACGTGGACCACAGCGGTATGCGGCCCTTGGACAGAGCCATTGGTTGTCGGAACACATCTGTAGTGGTTACGCTGCTGAGAAAAGGAGCCAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177:ENSBTAT00000005473:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
A:
NA
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]