HsaINT0163628 @ hg19
Intron Retention
Gene
ENSG00000170921 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:30212]
Coordinates
chr17:61465996-61466905:+
Coord C1 exon
chr17:61465996-61466118
Coord A exon
chr17:61466119-61466668
Coord C2 exon
chr17:61466669-61466905
Length
550 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTCTGTTTGTTTATTTCTAGGTC
3' ss Score
10.99
Exon sequences
Seq C1 exon
GGTTTGAGTAAAAAAGTTGGTGTATCATCCTCCATCCTCCAAGGTCTCTGGATCTCTTATAGCACAGAAGGTCTTTCCATGGCACTGGCGTCTTTACGAAATCTCTACACTCCAAATATAAAG
Seq A exon
GTAAATTTATAAAGAAATTATAAATATGATAAGGAATTAACTATGAAAAAATAAAACTAGAAGGACATTAAGTAGCTATTTAGTTGATCTTTGACTTGTCTTTCTTATTAGCCTTTTATTGATAATTTAATATATTTTAAATTGTTAAATTTTATTCTATAAATTAGAGACTAGCTCCATTGTCCTCTTAACTTCTATAAGCTGACTCTGACATATGGGATCAGGTCCTGCTGGTTCCAAAGAGTAAATTGATCTCAGGTAGCCTTTGTCTTGGTAGGAGCTTTTCTGACCAAGAGCTCACTTCGTAGAGACTATGTTCAGCACTACAGTATAGGAGGCAATTGCTCTAGTTACTATGCCATTTATGTAAAGGAGATATTTTACATTATCTACCAAAGGAAAAGAAAAAGGAGCAAATGAGATTATAAAATAAAGCAATTACTAAATGCTACTAGACACTGTTGTAGAATGTTAGATGGTTTAATAAAAGATGACTAAAAGGATGTGACTCCTGTTTGTCTAATTATTAGTTCTGTTTGTTTATTTCTAG
Seq C2 exon
GTCAGCCGACTGCTGATTTTGGGAGGTGCCAATATTAATTACCGGACAGAGGTTTTAAATAATGCTCCAATTCTATGTGTTCAGTCCCATCTTGGTTACACAGAAATGGTAGCCCTGCTGCTGGAGTTCGGGGCCAACGTGGATGCCTCTTCTGAAAGTGGCCTGACTCCCCTGGGATATGCTGCAGCAGCAGGGTACCTGAGCATTGTGGTGCTGCTGTGCAAGAAACGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170921-TANC2:NM_025185:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(7.7=17.1)
A:
NA
C2:
PF127962=Ank_2=PU(20.4=25.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTATCATCCTCCATCCTCCA
R:
CTTGGCCCGTTTCTTGCACAG
Band lengths:
342-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)