BtaINT0145019 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48375150-48376283:+
Coord C1 exon
chr19:48375150-48375272
Coord A exon
chr19:48375273-48376046
Coord C2 exon
chr19:48376047-48376283
Length
774 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTTTGTTTTCTTATGACTAGGTC
3' ss Score
8.07
Exon sequences
Seq C1 exon
GGTTTGAGTAAAAAAGTTGGCGTATCATCCTCCATCCTCCAAGGCCTCTGGATCTCCTACAGCACAGAAGGTCTGTCCATGGCGTTGGCATCTTTACGAAATCTCTACACGCCAAATATAAAG
Seq A exon
GTAAGTGCATCTAAGTTACAGACAGATTGAAGAATTAACTATGAAAACATAAAACTCAGGGGACATTTAGGAGTTACTTGATTGATCTTTGACTCTCCTGTTAACTAACCTTTTATTAATAGTTTGATATATTTTAAATTGTTACATTTTATTCTGTGAATTGAAAATCAAACCTGTTGATCTTCTATAAGATGAGTCTGATTTATAGACTAACTCCTGCTCCTTCTAGGGAGTAAAACATTCTTAGATCACTTTTGTTGCAGTAGAAGTTTTTCTGACCAACAGTTCACTCAGTGGAGACTGCACTACAGTATGGGTGGTGTTTGCTCTAGTTCCTGGGTAGTTTGTATAAAGGAGACGTTTCACATCCCTTTCCAAAGGCAAGGTATTAAAAAAGGAACAAATGAAGATTTTAAAATAAAGAAGTTACTCGGTGTTTCTGGGCACTTATCAAGGGTGACTTAAAGCTTCCCAGGTGGTGCTAGTGGTAAAGAACCTGCCTGCCAATGCAGGAGATGTAAAAGGTGCACGTTCAATCCCTGGGTCGGGAAGAGTCCCCGGAGGGGAATACATGGCAACTCGCTCCCATGTTCTTGCCCGGAGAATCCCACAGACAGAGGAGTCTTGTGGGCTGTGGTCTGTAGGGTCCCAAAGAATTGGACACAACTGAAGCAACTCAGCATGCATGCGTGCAGATGACTTAAGAAAAGATGACTGATAGGATATAACTGATATTTATGTGAGTATCGTTTCCGTTTGTTTTCTTATGACTAG
Seq C2 exon
GTCAGCCGACTGCTGATTTTGGGAGGTGCCAACATTAATTACCGGACAGAAGTTTTGAATAATGCTCCAATTCTGTGTGTCCAGTCTCATCTTGGTTACACAGAAATGGTGGCCCTGCTCTTGGAGTTTGGGGCCAACGTGGATGCCTCCTCTGAAAGTGGCCTGACTCCCCTGGGCTATGCCGCGGCGGCAGGCTTCCTGAGCATCGTAGTGCTGCTGTGCAAGAAACGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249:ENSBTAT00000005565:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(61.4=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGTATCATCCTCCATCCT
R:
CTTGGCCCGTTTCTTGCACAG
Band lengths:
343-1117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development