MmuINT0156863 @ mm9
Intron Retention
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105757160-105758018:+
Coord C1 exon
chr11:105757160-105757282
Coord A exon
chr11:105757283-105757781
Coord C2 exon
chr11:105757782-105758018
Length
499 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TGTCTGGTGTTTGTTTCTAGGTC
3' ss Score
11.02
Exon sequences
Seq C1 exon
GGTTTGAGTAAAAAGGTTGGTGTATCGTCCTCCATCCTCCAAGGCCTCTGGATCTCCTACAGCACAGAAGGTCTTTCCATGGCATTGGCCTCTTTACGAAATCTCTACACTCCAAATATAAAG
Seq A exon
GTAAACACAAAGAAACTGAAAATAGCTTAAATAATTGACTGTAAAATATAATTAGAAGGACATCAAGTAGCTATTTAGTTGATTTCTGACTTGCCTCCGACTATTTCCTAATGAGTGGTCTTTTAGTGATTTTAATGAGTTTTACATTGCTGTTTTATTCTGATGGACTGAGGCTATTGGATAGCTAGCTGATACCTGAGGTTAGGATCTGCTAAGGGTTCTGAAGGGCAGATGGATCTCAGGTAGCCTCCATTTGGGAAAGAACTTTTACAATCAAGAGTTCACTAAAGTGAGCCAACATTCAGCACTCAGGGTGCAATCCCTAACTCTAGCTAATGACAGAGACGTTTTGCATTATTTTCTAAAGCAAAGTATTCAAAGTAAAATAAATCATTTTTAAAAATACTTCCTAAAAATGCTACTGGACTCCACTGTAGAGTCTCAAGTGATTTTATGACTGAAAGGATGTGACTGGTGTCTGTCTGGTGTTTGTTTCTAG
Seq C2 exon
GTCAGCAGACTGCTGATTCTGGGAGGTGCCAATATTAATTACCGGACAGAGGTTCTAAATAATGCTCCTATCCTATGTGTCCAGTCTCACCTTGGATACACAGAAATGGTGGCCCTGCTTTTGGAGTTTGGGGCTAATGTGGATGCCTCTTCTGAGAGTGGCCTGACTCCCCTGGGGTATGCTGCAGCAGCAGGGTTCCTGAGCATCGTGGTGTTGCTGTGCAAGAAACGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-Tanc2:NM_181071:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(58.7=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTTGGTGTATCGTCCTCCA
R:
CCGTTTCTTGCACAGCAACAC
Band lengths:
342-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: