GgaINT0143984 @ galGal3
Intron Retention
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2525013-2525587:+
Coord C1 exon
chr27:2525013-2525135
Coord A exon
chr27:2525136-2525350
Coord C2 exon
chr27:2525351-2525587
Length
215 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GCTTCCCTTCTGCTCTGCAGGTC
3' ss Score
9.57
Exon sequences
Seq C1 exon
GGGCTGAGTAAAAAAGTTGGGGTGTCTTCCTCCATCCTGCAAGGGCTTTGGATCTCCTACAGCACTGAGGGTCTTTCCATGGCTTTGGCATCGCTGAGAAACCTCTACACCCCAAACATCAAG
Seq A exon
GTACTGATGAGGGGAGGGGAGAGCTGGAGGGGCTCCGGGGCTCCCATGAGGAGCTTCCATCACCCCACAGCACGAGGAGGAGGATCTTCCTGGCTTTGATGGATCTGCTTAGAAACACACAAAGGGCTCTGATTTCAATTCCTGTGTTGCTCTGACAGTAAACTCATTGCCATCCATAGCACTCAGCTAACAGGAGCTTCCCTTCTGCTCTGCAG
Seq C2 exon
GTCAGTCGGCTGCTGATTTTAGGAGGTGCCAACGTGAATTACCGGACCGAAGTTCTGAACAACGCCCCGATTCTGTGCGTGCAGTCCCACCTGGGTTACACAGAGATGGTGGCTTTGCTCCTGGAGTTCGGTGCCAACGTAGATGCTGCTTCTGAGAGCGGCCTCACCCCCCTTGGGTACGCTGCTGCTGCTGGGTTCCTGAGCATCGTTGTGCTGCTGTGCAAGAAACGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(57.9=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTGCAAGGGCTTTGGAT
R:
CAGCACAACGATGCTCAGGAA
Band lengths:
307-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]