DreINT0160162 @ danRer10
Intron Retention
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22660290-22661548:+
Coord C1 exon
chr3:22660290-22660412
Coord A exon
chr3:22660413-22661311
Coord C2 exon
chr3:22661312-22661548
Length
899 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
CCTCTTTTCTTTTCCTCCAGGTG
3' ss Score
13.64
Exon sequences
Seq C1 exon
GGCTTGAGTAAGAAGGTTGGGGTTTCCTCCTCAGTGCTGCAGGGGTTGTGGGTTTCCTACAGTACAGAAGGACTCTCCACAGCTTTGGCTTCATTGAGAAACCTCTACACTCCTAATGTCAAG
Seq A exon
GTATTTAAAACCAGATGAGACTTTATTTAAGGATCTCTGTGCAACCTCAAAATGCAAATTAGATGTAAATTTAAATCTTTATCTTTTATAAATGTAATTTGCTTCAGACACCAACATGTGCGTCTTGTGTTTGACCCAAATGGGCTTGAGCAGACAGAATTCCTAAACATTATGAGACATAAAGTTGAAGTGCACTAGCCAGATTTAAACTTTCCTATCTTAAATTATATGCTTGGTTTTAAAATAAACAGTAGAGAAACACAATGTACCTATGCCAGTCCTGATTACAGCACAAGCTCACATCGTTTGGTGTAGTTTTGAGGCTATCAGATTAGAAATGAAAGCCTTCTATGTAACTTGTCTATGAACATGTTGATTATTAATTTTGCTAACTTCTGAGGTAATCCTGAATGAAATTTACCATTCTTCTTTTGCTTTGAAGTGGATTTTGTGAAACACTTTTTAAAGAGTGTACATCGAATTTACAATCGAAATCAGAGTGCATTGTAGGTAAAACATAGTGAATGAATGTAGGAGAGGAAGTCGTTGACTCTGAATTTGAACATCACTTAATATAGTGCACTATATAGTTTGCTTGTTAAGTGTGAAGTCATGCAAATCAGCTTCCAAGTGCTTAATCAAACTCTAAAGGGAGACTCAACGAATTGTAATAATAAACGTTTAAAAAGCGATGTAATACTTTCGAAAATCACAATCGCTATGGCCATAAATTAATATTTTCTTAATTCAAATGAGTAGCGGCTTGGACACAGAAACAGTATTTCATACTTTACCGAACGTATACGTCATGACTTAACAAGCAGATATAGTTGATAGGAAGTAGTTTCGGACTCAGCAATGGTTTTATTTTAGCTCCTCCCTCTTTTCTTTTCCTCCAG
Seq C2 exon
GTGTCTCGTCTGCTGATTATGGGTGGAGCTAATGTGAACTACCGCACAGAGGTGTTGAATAATGCACCAATCCTGTGTGTTCATGCTCACCTGGGCTACCTGGAGACTGCAGCTCTGCTGTTGGAGTTTGGGGCCGATGTAGATGGTGTTTCAGAGAGCGGACTCACTCCTCTTGGCTACGCAGCCGCCGCGGGTCACCTGTCCATCGTCACCGCTCTCTGCAGCAAGAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097:ENSDART00000112270:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(6.6=14.6)
A:
NA
C2:
PF127962=Ank_2=PU(58.1=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTTGGGGTTTCCTCCTCA
R:
TGGCTTTCTTGCTGCAGAGAG
Band lengths:
346-1245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]