HsaINT0163633 @ hg19
Intron Retention
Gene
ENSG00000170921 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:30212]
Coordinates
chr17:61483515-61489047:+
Coord C1 exon
chr17:61483515-61483638
Coord A exon
chr17:61483639-61488871
Coord C2 exon
chr17:61488872-61489047
Length
5233 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
GCTATCACTTGCCTTTGCAGGTG
3' ss Score
10.48
Exon sequences
Seq C1 exon
ATTGTTGATCTTTTACTCACCCATGGAGCTGATGTCAACATGGCAGACAAGCAGGGCCGCACTCCCCTGATGATGGCTGCTTCCGAAGGCCATCTAGGAACCGTGGACTTTCTGCTTGCACAAG
Seq A exon
GTTAGTCTTGGAATGCTAGAGCTGGCTGGCCAGTTTCCATAATTACCTGGTGAACTCATGATTTCCAGCAATGGATCCCAGGAGATGCTAAGAACAGATATTAATCCAGTTGGTTGGAAAATGAAAGGCTATCTCCTCCCCTCTTGTATTCAGTGTAATGTTTTTAACTCTGATACTCTCTATTTCCTTATGACTTGAGGGATTTAAATGAAATTAACATATTCTAAATTCTCATTCAGATCAGTAGTCTCCAAACTTTGATTTTTTAAAAATATATACTCAATAAATGTTCATCTTCCGGGGATTGTGTTCTGACTTTATCAATTCTTTTGTAAGCCTGCACAACTAATATTTTTCTTGAATTCAAAGGAGGCAAATGCCAGTGAAGATCCCTGCTGACTCTGGGATGCTATTTGGGGGATCAAGATTATTACCCTGTAGTAATAAATTCCTTTTGACACTTACCAACATCCACAAATTCCTGGTGAATGGGAAATAAGTTAAAGGAGATGATGATCACACCACCATCATAAAGTACGTCAGGCTCCTGTTGGTTGCTGTGACCTCTATCACCTGTGCATAACAGTGGCTGCTGATGATGGACCTCTGTAGTAGAAAAAGCTCATCACTGGTGACTCTGCAGTGCCATCTAGTGGAGCTTGAGCATTTACTTGAAGCAAGAGACAGAGGCAGTCATTCCAGTTAGCCTCCACTATTAGTAAACTGGACGCAAATGTCGGTAATTACATCCACAAGCACATGTACTTTCCTTCAAGAAAACCAACCTCCTGAAGAATTATGCCTAGGCCAGAGCAGCTGAGGGTAGTTTAATTAGGAAGAAATTAGGTTTCTTCTAAGATTTCAAACTACAGCTCAGTCAGAGACTTACTGGATCTTTAGCTGTATCCCTTAAGTAAGATTTTTTTCCACAGACTCAGACTCAAGGCTGGGTCAGAATCAGAGAGTTGCTCTTACAGGGTGCGAAGTGGCTCTTGCCTTCCCCATATAAGCTACCAAAGAAATTTGGCTTCATGCTCTCTCCCTTCATTCTGCTGGGGAAGCAAGGAGGAGGAAGGTTGGGCCTAGATTCTCAAGATAAGATGTGTCCAGAGTAATATTCCAGAACAAACCAAGTCCACTGAAAGAGGCAGGAACTCTTGAGCCACTGATAACCTTTAGATAGCTGCAAAGTACCTGTCATGTGCCAGTAGAGGCTCCGTAGCCATAGATTCCAGGTATTTGTTCTCCCTTACCAGTGAAGACATTTTCATCTTTGGACTGTTTCATTTTTTTCCACACTTAGAGGCTTAATGAATTCAACAAAGATTTATTTAGGCTATGTTATTAGCAGAACACTATACTAGGAACTATGAGTGGTTCTGATTTTTTTAATTAATACACTATAACCTGTGCCCTCAAAGGGTCTATAATGTGGCAGGGAAGAGATGAAACAAAGATAAATGCCTTAAAAAGCGGAGAATCCTGAGTGCTCTGATACAGGCGTCCGTTGAGTTAGACTAGGACAGACTTTGAAATTCGAAGAGGAAAAATGTTTTGTATTTAGGGAGAGGAAGTAACATAGATGAAAGGCCAAAGAGGAATGACAGGTTTGGAGAAATATGCAAGCTGTCTAGTAAAATGTAAGGGGACTACGGAAAATAAAATTGGAAAGGTATGTGGAAATGGAAAAGGACCAAGTTAGAAGAATCTGGACTTAATTCTAAAGGAATCTGGGGAGGCTTTAAAAATTTTAAATAAGGAATTGATGGCAGAGTTATGCTTTAAAAACAATCACTCTGGCAGTATGTGAACAGCAGATTTGACAAAGGAGCCAGGAGATCAGTTAGGAAGCCATCGTAATGGAACATATGAGGCATAATGAGGTCCTAACCCAAGGGCAGTAGCTTTCAGCATAGAACAAAAAAGGGCTATGTGCAAGAGGTATTTTGGATATGAAGCCTGATTAGATGTAGGAAATAAGGATAGAACAGTTAAAGATAACTCCAGAGTTGTAAGACGGACATTTGGGAGAATTGTGATTTCATTAACTGCATGAGAAAGAAAAGAGAGAAGAGGAAGATTACAAATTGGATTTTGGAAGTATTTAACATATTATGGATTTGTTTCATGTGTATCTCCTTTTAATTTCTTCTCTTTCCTTATCTTTGGAAAAATCAGTTCATCTGTAATGTACATCCAAAACTTTCTTATCCTACTCTTTCCTCCACTGGATACTTTGTCCAGGAAATTTATAGATGTTGCATCTGAGAAAACGCCTTGGATTCTGTTCCGTATTTAAACTTATTCCATATTAGAGTCAGTGTTTTAATTGCAAACTATACCATTACATAAATGGCTCTCATCAGGATTAAGGGATGGTCCCTTCCAGCTTTTCATCCTCCTGTGGGAAACCATAGACTCTAATGACCTCCAGAGATGCAAAGGTGATAGGCTAGATAACTGCTGAGTAAACCCTGAGCCTGCTGTGGCAGGTGCTAAGCTTGAGCTGACATCCGAATCCTGTCCAGCTGAGGGGGCAGCCAAGTGTCCTGGTGCAGTAAGTTGATCTCTGATGTAGTTAAATATGACATGCCTACTGTGTGAAAAGCGTTGTCTTAGGTACTCTTCTAGCAAGTAAATGATTCGCTTCTTACCATTGAAGGCCTTACAGTCTGGGTCTTAAGAACCAAATGTATATTGGATTTTAGACTGATTACAAAACAGCATGTCAGGTATGCTTGATCCTTTCAAGTGAAAATAGAAATGTTGAAGGGAAACAGATCCAGAATATGAAAGGGTGGGTGGAGAATTTAAAAGTGGGGATGGAGTTATTGAATAAGGCTGAGTAGTTTAAACTCTGAATTTTTTGTTTATTTGTATTTGTTTTTTGTTTTTGTTTTTGTCTTTTTTTAGAGGCAAGGTCTCACTCCATCACCCAGGCTGGAGTGCAGTGGCCTGATCATAGCTCACCAAAGCCTGGAACCCCTGGGCTCAAGCGATCCTCCCATCTCATCCTCCCATCTCAGCCTTCCTAGTAGCTAAGACTACAGGCTCACACCACCACCACACCTGGCTAATTTTTTAGTTTTTTGTAGAGACAGTCTCACCATGTTGCCCAGGCTGGTCTCAGATTTCTGGCCTCAAGCAGTCCTCCCACCTCGGCCTCCAAAAGTGCTGGGATTATAGGTGTGAGTTACTGCACCCAGCCAAATATTTATTTTTTTAATTGACAAGTAAAAATGGTATATGCAGTTATGTATCACTTAACAAAGGGGAGATGTTCAGAGAAATGCATTCCAAGAATTGTGTCCTTAGGTGATTTTGTCATTTGTAAACATCATAGAGTGCACTTACACAATCCTAGATGGTATAGCCTACTACACACCTAGGCTGTATAGTATAGCCTGGTGCTCCTAGGCTACAAACCTGTACAGCGTATTAACTGCACTGAGTTACTGTAAACAGTTGTAACACAGTGGTATTTGTGTAGCTAAACATATCTAACCATAAAAAGGAACAGTATTTATGGTGTACAACATGATGTTTTGATGCAGGCTGTATATCCCTTATCTGAAATGCTTAGTTATATATCGCTTATCTGAAACACTTCTGTTGGGATTTTATTTTTTGCATTTTGAAGTATTTGCATTATACTTACTGGTTGAGCATTTCTAATCCAAAAATGTGAAATCCAAAATGCTGCAATGAGTATTTCCTTTGAGTGTCATGTTGGTGCTCAAAAAGGTTCAGATTGTGGAGCATTTCTGAAATCAGATTTTCAGATGAGGGATACTCAAGCTGTATATGTATACATTGTGGAATGGCTAAATCAAGCTACTTAATGTGTGCATTACCTTACACACTTTTTTCTTCTGGTGAAAATGCTTAAAATGTACTTTCACAACAGTTTTCAAGTATATATTGTTATTAACTATCACTATGACTATAGTTAACTATAGAGTAGATTTAGTGTACTAGTTAGTAACTAGTACCGTAGATCTCTTGAACTTATTTCTTCTTTCTAAGTGAATTTTGTGTCTTTGACCAACATCTCTCCAATCCCCCCCCCCCATCTCCTAGTTTCTGGTAACCACCATTTTATTCTTTGATTCTATGAATTTAACTTTATTAGATTAAACTCTAGATTTCTTTCTTGTCCTGGGCTCAGTGTCCTCTCGTGTTTATTTCCCCCACCTGGGGAGGGAGAAGGGGCCCTGGCATCGTGATCAATGACAAACATGTCCTGGGCTCCTATTTGATGAGACTGTCTCAAGGAGTTAGCACTATTATCAATGGAAGGCTTCTGCTCAGCTCAGAAAACATTCACCGAACTCTGGTGCAGTGAGGGCCGAGGCAGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGTGCATGCCTTTAATCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATTGTCTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGGGCCACTGCACTCCAGCCAGGGCAACGGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGCAGAAGAAAATGCTCATTGAGAATTTATTACATGCAAATAGTATACATAAAAAGAAATAATGGAATAAGTTGACTTATGTTAAGCATACTTAAGATGAGGTAGCAGTGAACTGTGAGAAGCTTCTTAGAGGCAGGAGGATGGAGATAGTTCCTAGAGAATGAGAAGTGAGGCAAGTCATGGGGGAAGAAAAGCTCTTCCACACATGGAGCAGCATGACCAAGAGTGAGGATGCAGGAGGATTTACGGGAGATCCGAGAGGCAGAGAGTGAGGATGCGGGAGGATTGACGGGAGATCCGAGAGGCAGTGAGCACATCCATTTGGCCAAAGTGGAGGATTCTCACAGGGGAATAATAAAACAGGTATAGAGAGTAATTAGGAATAGACTGTGGATGACCCTGAATACTCAGTAAAACGACTGGAATCTGTTTTATTGAAAGCTTATAGGATGAACTTTTAACAGTTGAGATACAACTGGCATACCAGCATCAGTCTTAAAATGGAAATAGTCCAGAAACGAGCAGTGTTCTTTGCAGGAGCATGCCCCTTCAGCGTACTTCCCCTCCTGCTGTGTGATTCCATGTCTCCTCAGCCCTGTGCTATCACTTGCCTTTGCAG
Seq C2 exon
GTGCCTCCATTGCTCTTATGGACAAAGAAGGATTGACAGCCCTCAGCTGGGCTTGTTTGAAGGGCCATCTCTCAGTAGTACGTTCTCTGGTGGATAACGGAGCTGCCACAGACCATGCTGACAAGAATGGCCGTACCCCACTGGATCTGGCAGCTTTCTATGGCGATGCTGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170921-TANC2:NM_025185:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)