RnoINT0147546 @ rn6
Intron Retention
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94114379-94117152:+
Coord C1 exon
chr10:94114379-94114502
Coord A exon
chr10:94114503-94116976
Coord C2 exon
chr10:94116977-94117152
Length
2474 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ACAGGTTTCTCTTCTTTTAGGTG
3' ss Score
9.78
Exon sequences
Seq C1 exon
ATTGTTGACCTTTTACTGACCCATGGAGCAGATGTCAACATGGCAGACAAGCAGGGTCGTACTCCCCTGATGATGGCTGCTTCTGAAGGCCATCTAGGAACTGTGGACTTCCTTCTTGCACAAG
Seq A exon
GTAAGCCTGAGAGGCTGTGACTAGAGCCTGTAAGAATTCACTTAACTCCAGGCATTTGGAACATGTTGAGAATGATATTACTAATTCAGTTGATTAGAAAACACAAAGCCGGACTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAATCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTGTGTGTCTGAAGACAGCAACAGTGTACTCATATATGTAAAATAAATAAATATTTTTTAAAAAAGAAAGGAAGGAAGGAAGAAAAAAATGCAAAGCCAGATGCTCCTGCTTTTTTTTTTTTCTCCTCCAGTTTTTTAAAATAAGATTCCAGGCTGGCCTTGAACTTACAACATTGTTTCTTGCCTCAATCACCTAAGTATACCTGGTGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATATACATTCGAATGGGTATATATGTTTTTATCACAGTGTACACCAGGCTGACCTCAAACGAGGTGATTCTCCTGTCTTAGCTTCCAAATAGCAAAGTTTACAAGTGTACCTCACCACCCCCAACCTGCCCACTTACACCCTGGGGAATTCTAACTCTGACATTCCCTTTTTCCTTATAGCCTGAGTGACTGTTATGAAATCAATACATTCTGAACTCTTTCTTTCAAATCAGTAGTCTCCAGACTTCAATATTTTTATGTATACCCAGTAAATATCCACCTATCTTAGAGGCTGATTTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTAGGGGTGGGGTTGAGGGTGGTATGGTGTCTTATTGTGTAGTCCTGGCTAGCCTAGAACTTGCTCTGTAGACCAGGCTGGCCACAAACTCACAAAGGTCCACCTGTGTTGACCTCCGAACTGTTGGGATTAAAGGTGTGCACCAATACACCAGGCAAAGCTGGATATCAGTTTGTCAGCCTGCATGGCTAACATTTGTTTCTTGACTCCAAAGGAAAGTTGAAGCACTTGCTAGCAATGAGGCCCTCTTTGGAGAATTAGGATATTGCTATTAAGCTGTCATAATAAATTCCATGTGACACTTTCCAACACACTCACACCGTTGGTAAATGGGAAACTGCTTTTTCTCTACAGGTGCACAGTGGTAAGACATTTCAGCTTCCTGCTGATTGCTATAAGCTCAGCCACCTATGCAGTAGTGGCATCACAGACTGCCATATAGAAAAGGCTCATCTCTAGTAGCACTGCAGCGCCATCTAGTGGAGTCTTAGATTGGAGCAGCAGGGGCTAGTAAGGCATCTGAAACTATGACATCATTCCAGTTAGCCTTTGCTGTTAATAAACCAACCTTAAATATATATAATTATCCATATGCAGATGCACGTTCCTTTAAGGGAACCAGCCTTCTGAAGAACTGTGCCCAGACCTGAACAGCCAAGGATAGTTGAATAAGAAGACTGGGCTTCTCCTAAGAGACTTGCTGTGGCTTTAGCTCTGTCTTTGCAGGAAAGATTTGTTTCCACAACCTCAGACTCAAAGGTGGCTAGAGTCAAGAATTGCTCTTGCAGGGTACAGTGTATCTCTTGCCTTGGTACAAGTTGCCGAACAAGTCTGACTTGATATCTGCCTTCATTTCTGCTAGAGGAGGGGAGCAGCACATGAGGGAACAGACCTAGGTTCTTAAGATGTGGCACACAGCGGGGGTTGGGGATTTAGCTCAGTGGGGATTTTAGCAAGCGCAAGGCTCTGGGTTCAGTCCCCAGCTCCTGGAAAAAAAAAAAGATGTGGCACACAGCAAGGTCCAGAGCAAACTGTAGCCATTAGAAGAGCACTGATGACCTTAGATGAGTACTGTGTTTGCCACATGCCCGCAGACATCCACAGGCATAGATGACAGGTTTGCTCTCCCCATGGTCTTTGAACCTTTTGTATTTTCTTTAGGTTTTCTTTTTTTTCTTTTGTTTTTTTTCACTTACATGAGTTTTCACTAAGTTTAGACTACATTGTTTGTAGAACATTGTAGAGTAGGAACTCTCAAGTGATTTTAATTTTTTTAAATAATCTATAATTTATAGCTGGTGACCCGGTTTAGCTGGCTGAGTGCTTGTCTAACATACACAAGGCTCCAAGTTCAGTCTCAGCACCACAAACTTGGACTGACACACCTACAATCACAGCACTCAGGGGATGGAGATGTGACTCACACAGGCCTTGAACTCACTGTGTAGCCCAGACTACCCTCAAACTCACGATTCCCCTGCTTACTCCTACCTGTTTGGGGGTTATTGGTGTATGTCACCATGGCCAGTCAGGGTCACTCTTAAAATGAAAAGAGTCTAGAAGTGAAAGCTATTCCTCAACAGCATGTATACCTTAGACATCAGCATCCCTTTTGGCTGTAAACTTTTGTGTCCTCGGTCCATTAAAACAGGTTTCTCTTCTTTTAG
Seq C2 exon
GTGCCTCCATTGCCCTGATGGACAAAGAAGGGTTGACAGCCCTCAGCTGGGCTTGTCTGAAGGGCCATCTCTCAGTAGTACGCTCTCTAGTGGATAATGGAGCTGCTACAGACCATGCAGACAAGAATGGCCGCACCCCACTGGACCTGGCAGCTTTCTATGGTGATGCTGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840:ENSRNOT00000077280:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]