DreINT0160168 @ danRer10
Intron Retention
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22664125-22666157:+
Coord C1 exon
chr3:22664125-22664248
Coord A exon
chr3:22664249-22665981
Coord C2 exon
chr3:22665982-22666157
Length
1733 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
CTTTGCAACTTCTTCCTCAGGTG
3' ss Score
9.5
Exon sequences
Seq C1 exon
ATAGTGGACCTGCTGCTAAATCATGGCGCTGATGTCAACATGGCTGATAAACAAGGGCGAACACCTCTAATGATGGCTGCTTCTGAAGGACATTTGGGTACTGCAGAGTTCCTGCTGGCTCAAG
Seq A exon
GTACCGCTGGTCTGCTCACGCACTAAATTTACTGCTGCACTATCTGTTATGCTATTTTCAGGTTCCTAAGTATGCTTTTGGAGGTCTCCTGAGAAAGATTTACATCCACCTGAGGACAACAAAACACTTCTCTGCTCTGATTGGTCTGATGGCCTAGCCTTTTGGGATTTGTCTGCCACTTATTTAGCATGTTTCAAAATTCTATCAAATTCATATCTGAATTCCAGCTCTTGAGGCTTACTCAGCACTTGTGAACACGGTGATATGAGCAGTATTAATGATGTCAGTTTTATGATAACATATTGAGCCCAAGTTCGCAAATAATACACCAAATAAAGTAGCTGAATAATCCAAACTGTTATAACAAACAGTTTGGATTTGCTTTTGCCACACAAAAAGTCTTCATTAGTCCGTTTCACAATACTGGCCCGTTTCACAATCCTGGTGAATGGCTGTTAAATTACCAAAACAACTTTATTGATAAATTCAAACATTATCAAACATTGGCTGTTTGCACAAGCAATGACATTTGGAATTATTTCAGAAAAACATCATCAAGGGTTTTGCTAGAATTGGTAAACATGAAGGGGCCAGGATTTTTGTTGATAGTTTTATATGTTTCCACATCTTGTACATTATCATACCATCAATATCATCGTCATACTTCTCATTGAGGAAAATTGCAGAAACTAGGGTAATTAATCTGTCAATTTAACGGTAATTTTCCGGAAAAGATTGTATGTGTGAAAGAAGCTACTCACAATAATAAACAAACTCATTTTGTTTTTTGAGAGGGGAGACAGTATCTCCATTTATCTGCACTCTGATCTTTAAAACATTGCAGAAAATTATTTACAAACAGTCAGGGGTGTACATTTAGCATGGCCGGAGGGTACGAGGCTGTAGCTGTGTTCAAATACAAGCAGCGCCAAAACCGAGAGGATGCTCGCTGCAAACCTACTTGGGTGGAGCTCACTTTTAATGAGGGGCAGCCTGTGCTTCAGCTCTTCCTCCTACAAGCTGTTTTAATGCGTACAACTACCCCGCCCCAAACCCATACCCCAGTGACATCACTTGTGGAAGAAGAGCTGGAGCTCATGCTCCCCCTTGCTGGAGTTCAGCTCTGTCAATGTGCCTCTGCAGTGAGTACCACTTGTTAAAACTGTAGGGAAATTTTAAGGTGTGTGACACACAAGTGAGGATGGCAGCAGCAAAAAAAAAAAAGTGCACATAAGAAGCTTTGTTCAACGAAAGGTTATACCAGACTGATATAGTCAGTAAATATTATGTCCATAATATGTCCAGCTAAATGTAAAAGTATATGATCCCTGCCAGTTCTTATAATCTCTCAGAGTAGCATGTCGAATTTCCGTTGAAACAATTTGTCAGAAAAACTACTGTACAGCCTGTGCGTCATTTTTTTTTATTAATACAGATATATGAGATGTTTCGTTTGAACTATGGCAAAAATAAAAGGAACTCCTTCCTTAAACATTGCAGTATTTCATTTAACTTAATAAATTGTATGAAGAGAGAAGTAATTAATAATATATTTTAGTAGCATTAATGTTAGCAATAATTATGCTCCAATTACATAATTAATTGTAGCAACAAAAAAATTTAACATTCTAGAAAACCGTTATAGTGCACACTAGGTGAAAGTAATATCAGAAAAAGCATAATAATAACAAAACTTCTCTGACTTTCTGACTTCTTTGCAACTTCTTCCTCAG
Seq C2 exon
GTGCGTCATTGTCTCTAATGGACAAAGAGGGTCTGACAGCGCTGAGCTGGGCCTGTCTTAAAGGACACCTCCCGTTGGTTCGTGCTCTGGTGGAGAGAGGTGCAGCAACAGCCCATGCAGACAAGAGCGGCCGCACTCCACTGGATCTTGCTGCATTTTACGGAGACTCTGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097:ENSDART00000112270:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(43.0=67.8),PF127962=Ank_2=PU(32.4=39.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGACCTGCTGCTAAATCA
R:
TCAGAGTCTCCGTAAAATGCAGC
Band lengths:
294-2027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]