GgaINT0143989 @ galGal3
Intron Retention
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2533332-2536772:+
Coord C1 exon
chr27:2533332-2533455
Coord A exon
chr27:2533456-2536596
Coord C2 exon
chr27:2536597-2536772
Length
3141 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
GCTGCCACTTGTCCTTCCAGGTG
3' ss Score
10.53
Exon sequences
Seq C1 exon
ATTGTGGACCTGCTGCTCACCCACGGCGCCGACGTGAACATGGCAGACAAGCAGGGCCGGACACCACTGATGATGGCTGCGTCGGAGGGACACCTGGGCACGGTGGAGTTTCTGCTTGCACAAG
Seq A exon
GTTAGAACACGTGTTTGGAGCATGTTGGGGTCTGCCCACAGCAAGTCCCCTCCCAGTGCCTTCTGCATTTCCTCAGGGATGGGGATTGTGGCCCCATTGCCAGATGGGGCGGTGGGAGAGGTCCCCATCACTTTCCCAGCTGTTGGAGAGCACAGTTGTGGTTGGTGTACTCATCTTGGCCGTCTGTTTTGTTTTCTGTGTTTGATGCTCAAAGCCCCCAAACCAGATAGTGTGTAGGAATTACGATGGCAGCGTATGAGAGGTGCTTTGGGCACTGAGGGCAGAGTGTGCCCCTGAGCTGAGCCTCCAGCTTTCCCCTCAGACAGAAATCAACGAGCGGTGCACCTGAACTGCAAGCAAGACCACAGAGTGATGCTCAGCCCCAGGGCCGGGGCTTGGGGCATGTTATCACTCCCATTTTCATTGCTAGCATTGCTACTCATGGTTTTGACACCCACATGAACAGGATGGTAAGGCCCTAACATGGGAAAGGATTTGGTGCATTGGGTGTTTTGAAGATGCTGCGCTCTTCAAGTCTAGAGCTCCCAGATCCACCTTGCTCAGTGCTTCCAGTGTCTGATAACTGCTTCGCTCAGAGTCGTTCAGTCAGCAAGAATGTATTTCAGTTTTGCTCATTTCTGGTGCAAATCACCACGTTTGAGGTGATGCGGAGCAGCACGCTGCCTGCAGCCTGTACAGACACCACTATTTCTGTCCTTCCTTAAATGCAGGCCAGGGGGAGGTGTGCAGCCCTGCATGGGGCTGTGACAGCGATCACGAAGCTGAGGGTCCAAGAAATCAAAGCCATAAAAACCTTTTGTACTTGAAAGGGACTGTTCATTAAACACCACTAAATCTGCCTTAACACGTGGTCCTGAAAAGTTAGCTCGAGCCTGGGCAGGGTACAGTGATATATAGGGTATGTTAATTAAAATGGCTTTAACAATCCTGGTTAATGTTTCATTAGAATCAAAGCGTGTGAATCATAAGCCATAAGCAGTAATTAGAGTGTTGCAAAGCAAATCTTGTTTGGCTGTACTTGATTAATGCAGTCAGCGTTTGTAAACACTTTTTATTAACTGAGTTGCAGTCCTCAATCAACTTGAAATCCAGACTGGTGGAGTCACCTGCTGCTCTGAGCACCTGGGAGGAGCAGAGCTCTGAACCATGAATTAAACCTCCCTGGTTGTACCTCTGCCAGAGCAGCTGTTGGTCCATTGGCTGTTGTATCCAGACAGAACCTTTCCCACTGCAGCAGGGGTCTGTCCTGTGATGGCACCTGAACCCAATTCCCCTCCCAGCTTTCTGCTTGTTCCATGTCCTTAATGCTGAGTGGGTCAGAGACCCCCGGGGAATGCAGGATGCATTAAGGAGGAGCAGAGAGGCACACAGAGGTTGTGCTGGGAGCCTGGCTCTGCTGTGGCCCTGTCTGCTTGCTGGGACCTTCAGTTTGGATCACTGCATTGGTGCTCTGAAGCCTGAGTGTGTCACTCCGTTGTGTGGTGGCTCTTCCCTTGGACTGGGGAAGGAATGGGAGGGTTGGGTGGTGGTGCAGCTTTCCAGCTTTCCCTCTTCCTGCAGGAGCCTTCTCACCTGCTCCAAAAGTCAGGGGGGGGAAAAACAACAAGAGAACTGAAAAATATCCCAAGTTGGAAGGAACCCATAAGGATCATTGAGTCCAACTCATGGATCTGCACAAGAGAATCGTGGAATCATAGAATATCCCAGGTTGGAAGAGACCCATAAGGATTATTTGAGTCCAACTCATGGCTCCACACGGGACCACCCAACAACAAAGGACTTTGTTTAATTGCAAGAAGAAAGCTGGTACAAATGAGAAGGAACGAAATGAGGTTTATCCTTTGTAGTGGAGCAGCAGTTGGCCTCAGGTAGCTGGGGATCATCTCAAGAGCTTTCACAGGAGGATTTGTGGGTGCCATGTGGGGCAGCGTTACAGCGGGTTGCAGGAGGTGAGGAGCAGTGTTGTCAGCAGAGTGCCACCCCAGCACACCATGCTGTGCACGCAGCAGACAGAGTGTTGGGCTGTGCTGGGAGCTCTAGCTGCAGATTTCTGAACATAATCTCCAGCAAACGTTCACGCTGTTTTGCTCCTCCACAAACAAGATGGGCGAGCTGGAAGACAGAGCAGCTCACTGTCATCTGGGCAATGCATGCTTCCCAGGGATGTGTCAGCTGGGATGAATGGGAAGCTCAGGACGTTCACATTCCTCCCCCACTTGCTAAGCTTTCTGGAGCCAGGGAGAAACTCATGCTTGAGAGTTTACCTACAGGAGAAAAACACTGCAGCAGCGATTCAAGCCAACCTGCTGGCAGGAGCATCCCGCAGGTAGGAACAGCTCCTCGGAGCAGCAGAGCTGATGCAGATCTCTTCTGCACGCTGGAGAGCGAGAGCCCTGCGTGTGCCATGGCAACAGGAGCTGTCTTCGTGCCACGCAGAGGAGTGTTCACTTCATGCTGCTGTTCAAATCACGTATGCGGATCCATATGCCGTGTGAAGCAATGCTGACCCGTTGGTATGGCAGCGCAATTTCTGCATCCAAGAAAATGTCAAGTTCCCCCCTCCTTGGCTTGCAGTTGGCAGTAGTTTATCCCACAACGTTGTATTTATGTTGGGTAAAGTTCAGGGAGAAATACTGCTGGAAATTGTGTCGATTTGGGTAAAAGGGAGGAGAGCGAGGAGGGGGAAGTACGTGCTTTTGGGGAAGAATGGGGGTGATTTAGTTCCCCTGGTACGCCGCGATCTGCTGAAGCAGCAAAATGGCCCTCATCTCTGACTCACAAAGGCTGGATTAAAAAAAAAAAAACACCACCAAAAAACAGTTAAAAGGAAAGATTGACGTCTCAGCTGAGGGATGTCAGATCCACCCTGCTGCTCAGGGTCTGCGGAGCGAAGTGTGAACAAGCTTGCAGCTCGGTGTGAATAAACCTGCTTGCACAGCTCGTGTCAGTGCATTTGGAGTTGTGATGGAGGGTGAGCTACAGACTGGGGGAAATGCTAATAAAGTCATTAATAATTACATGTATCATTCTCTAAAAACAAGCTGTCATCACTGTGTGGAGAGTTTGTGATGGTTTGTTGTGTCATAGTGCTTGCAAGTGAGCTGCCACTTGTCCTTCCAG
Seq C2 exon
GTGCCTCCATTTCTCTGATGGACAAGGAGGGTTTGACAGCCCTCAGCTGGGCTTGCCTGAAAGGCCACCTGGCCGTGGTGCGGGCCCTGGTGGAGAACGGGGCGGCCACCGACCACGCCGACAAAAATGGGCGCACACCACTGGACCTGGCGGCTTTCTATGGCGACGCGGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
NA
C2:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]