GgaINT0143989 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2615980-2619420:+
Coord C1 exon
chr27:2615980-2616103
Coord A exon
chr27:2616104-2619244
Coord C2 exon
chr27:2619245-2619420
Length
3141 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
GCTGCCACTTGTCCTTCCAGGTG
3' ss Score
10.53
Exon sequences
Seq C1 exon
ATTGTGGACCTGCTGCTCACCCACGGCGCCGACGTGAACATGGCAGACAAGCAGGGCCGGACACCACTGATGATGGCTGCGTCGGAGGGACACCTGGGCACGGTGGAGTTTCTGCTTGCACAAG
Seq A exon
GTTAGAACACGTGTTTGGAGCATGTTGGGGTCTGCCCACAGCAAGTCCCCTCCCAGTGCCTTCTGCATTTCCTCAGGGATGGGGATTGTGGCCCCATTGCCAGATGGGGCGGTGGGAGAGGTCCCCATCACTTTCCCAGCTGTTGGAGAGCACAGTTGTGGTTGGTGTACTCATCTTGGCCGTCTGTTTTGTTTTCTGTGTTTGATGCTCAAAGCCCCCAAACCAGATAGTGTGTAGGAATTACGATGGCAGCGTATGAGAGGTGCTTTGGGCACTGAGGGCAGAGTGTGCCCCTGAGCTGAGCCTCCAGCTTTCCCCTCAGACAGAAATCAACGAGCGGTGCACCTGAACTGCAAGCAAGACCACAGAGTGATGCTCAGCCCCAGGGCCGGGGCTTGGGGCATGTTATCACTCCCATTTTCATTGCTAGCATTGCTACTCATGGTTTTGACACCCACATGAACAGGATGGTAAGGCCCTAACATGGGAAAGGATTTGGTGCATTGGGTGTTTTGAAGATGCTGCGCTCTTCAAGTCTAGAGCTCCCAGATCCACCTTGCTCAGTGCTTCCAGTGTCTGATAACTGCTTCGCTCAGAGTCGTTCAGTCAGCAAGAATGTATTTCAGTTTTGCTCATTTCTGGTGCAAATCACCACGTTTGAGGTGATGCGGAGCAGCACGCTGCCTGCAGCCTGTACAGACACCACTATTTCTGTCCTTCCTTAAATGCAGGCCAGGGGGAGGTGTGCAGCCCTGCATGGGGCTGTGACAGCGATCACGAAGCTGAGGGTCCAAGAAATCAAAGCCATAAAAACCTTTTGTACTTGAAAGGGACTGTTCATTAAACACCACTAAATCTGCCTTAACACGTGGTCCTGAAAAGTTAGCTCGAGCCTGGGCAGGGTACAGTGATATATAGGGTATGTTAATTAAAATGGCTTTAACAATCCTGGTTAATGTTTCATTAGAATCAAAGCGTGTGAATCATAAGCCATAAGCAGTAATTAGAGTGTTGCAAAGCAAATCTTGTTTGGCTGTACTTGATTAATGCAGTCAGCGTTTGTAAACACTTTTTATTAACTGAGTTGCAGTCCTCAATCAACTTGAAATCCAGACTGGTGGAGTCACCTGCTGCTCTGAGCACCTGGGAGGAGCAGAGCTCTGAACCATGAATTAAACCTCCCTGGTTGTACCTCTGCCAGAGCAGCTGTTGGTCCATTGGCTGTTGTATCCAGACAGAACCTTTCCCACTGCAGCAGGGGTCTGTCCTGTGATGGCACCTGAACCCAATTCCCCTCCCAGCTTTCTGCTTGTTCCATGTCCTTAATGCTGAGTGGGTCAGAGACCCCCGGGGAATGCAGGATGCATTAAGGAGGAGCAGAGAGGCACACAGAGGTTGTGCTGGGAGCCTGGCTCTGCTGTGGCCCTGTCTGCTTGCTGGGACCTTCAGTTTGGATCACTGCATTGGTGCTCTGAAGCCTGAGTGTGTCACTCCGTTGTGTGGTGGCTCTTCCCTTGGACTGGGGAAGGAATGGGAGGGTTGGGTGGTGGTGCAGCTTTCCAGCTTTCCCTCTTCCTGCAGGAGCCTTCTCACCTGCTCCAAAAGTCAGGGGGGGGAAAAACAACAAGAGAACTGAAAAATATCCCAAGTTGGAAGGAACCCATAAGGATCATTGAGTCCAACTCATGGATCTGCACAAGAGAATCGTGGAATCATAGAATATCCCAGGTTGGAAGAGACCCATAAGGATTATTTGAGTCCAACTCATGGCTCCACACGGGACCACCCAACAACAAAGGACTTTGTTTAATTGCAAGAAGAAAGCTGGTACAAATGAGAAGGAACGAAATGAGGTTTATCCTTTGTAGTGGAGCAGCAGTTGGCCTCAGGTAGCTGGGGATCATCTCAAGAGCTTTCACAGGAGGATTTGTGGGTGCCATGTGGGGCAGCGTTACAGCGGGTTGCAGGAGGTGAGGAGCAGTGTTGTCAGCAGAGTGCCACCCCAGCACACCATGCTGTGCACGCAGCAGACAGAGTGTTGGGCTGTGCTGGGAGCTCTAGCTGCAGATTTCTGAACATAATCTCCAGCAAACGTTCACGCTGTTTTGCTCCTCCACAAACAAGATGGGCGAGCTGGAAGACAGAGCAGCTCACTGTCATCTGGGCAATGCATGCTTCCCAGGGATGTGTCAGCTGGGATGAATGGGAAGCTCAGGACGTTCACATTCCTCCCCCACTTGCTAAGCTTTCTGGAGCCAGGGAGAAACTCATGCTTGAGAGTTTACCTACAGGAGAAAAACACTGCAGCAGCGATTCAAGCCAACCTGCTGGCAGGAGCATCCCGCAGGTAGGAACAGCTCCTCGGAGCAGCAGAGCTGATGCAGATCTCTTCTGCACGCTGGAGAGCGAGAGCCCTGCGTGTGCCATGGCAACAGGAGCTGTCTTCGTGCCACGCAGAGGAGTGTTCACTTCATGCTGCTGTTCAAATCACGTATGCGGATCCATATGCCGTGTGAAGCAATGCTGACCCGTTGGTATGGCAGCGCAATTTCTGCATCCAAGAAAATGTCAAGTTCCCCCCTCCTTGGCTTGCAGTTGGCAGTAGTTTATCCCACAACGTTGTATTTATGTTGGGTAAAGTTCAGGGAGAAATACTGCTGGAAATTGTGTCGATTTGGGTAAAAGGGAGGAGAGCGAGGAGGGGGAAGTACGTGCTTTTGGGGAAGAATGGGGGTGATTTAGTTCCCCTGGTACGCCGCGATCTGCTGAAGCAGCAAAATGGCCCTCATCTCTGACTCACAAAGGCTGGATTAAAAAAAAAAAAACACCACCAAAAAACAGTTAAAAGGAAAGATTGACGTCTCAGCTGAGGGATGTCAGATCCACCCTGCTGCTCAGGGTCTGCGGAGCGAAGTGTGAACAAGCTTGCAGCTCGGTGTGAATAAACCTGCTTGCACAGCTCGTGTCAGTGCATTTGGAGTTGTGATGGAGGGTGAGCTACAGACTGGGGGAAATGCTAATAAAGTCATTAATAATTACATGTATCATTCTCTAAAAACAAGCTGTCATCACTGTGTGGAGAGTTTGTGATGGTTTGTTGTGTCATAGTGCTTGCAAGTGAGCTGCCACTTGTCCTTCCAG
Seq C2 exon
GTGCCTCCATTTCTCTGATGGACAAGGAGGGTTTGACAGCCCTCAGCTGGGCTTGCCTGAAAGGCCACCTGGCCGTGGTGCGGGCCCTGGTGGAGAACGGGGCGGCCACCGACCACGCCGACAAAAATGGGCGCACACCACTGGACCTGGCGGCTTTCTATGGCGACGCGGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]