HsaINT0174148 @ hg19
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39166823-39167881:+
Coord C1 exon
chr3:39166823-39167023
Coord A exon
chr3:39167024-39167751
Coord C2 exon
chr3:39167752-39167881
Length
728 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
CCACCGCCGTGTTCCCACAGCCC
3' ss Score
9.73
Exon sequences
Seq C1 exon
GTGCTAATTTTCCTCCAAGCCCTCCTGATGTCCAGGAAGCACAAGGGGGAGGAAGAGACCACAGCGCTCCTGAAGGAGGCAGTGGAGCTTCACTTCTCCAGCATGCAAGGCATCCCTCTTGGCTCTGAGTACTTTGAAAAGCTGGACCCGTACTTCCTGGTCTGCATTGCTAAGGAGTACTTGCTCTTCTGCCCCAAGCAG
Seq A exon
GTTAGGGGAAGGCCTGTCTTCATGGTGGGGGTCTGGAGTACAGGTTTGGATGGTGCCCACCTGAAGGACAGAGGCAAGGACCTTACTTGGCCAGTCACAAGTAAGGATGGGGTGAGCCTTGGGCAGCTGGGGAGCCCAGTGCTCTTCAAACTTGAACATACAGCACACAGGTCACCTGGGAGGTTGTTCCAGTACAGATTCTGACTCTACAGGGGGGTCTAAAACCCTGCATCTCTAACAGGCTCCCAAGTGATATGGATGCTGCTTGTCTAGGGACCACACTTGGAAGAACAGGGCACCGGCCCATGGCCCTGCCTTTATCCGAGATGAGAATTTGGCTTCCTTTTCCGCAGAAGCCCCCTAAGAAGTATGTTAGTCTTTACTTGTTTGTCCTGCTCTTCCAGCCAGTCAGGATTCTTTGTGACCAAGGATCATATTTTTATACACCTTAATATCCCCCCAGTGCCTTGTAATGAGTCATTCAGCAAATATTTATTGAGTGCATTACTACATGCCAGATACCATTCTCGGTACTGGGGACACAACAGTGAACAAAACAAAGTTCCATAGCCTGGAGCTCGTGCTCTAAGCACTAGGTGATACAGAGGATAATAAATAAGTGTGGAATGAAGCAAAATTCCTTCACTGAGAGCATTTTCTGAGAGCTCCAGGAGTCTCTCTTAGAATAGGGCAAACCTACTCCCACCTCCACCGCCGTGTTCCCACAG
Seq C2 exon
CCCAGGTTACCAGGCCAGATCGTGTCTCCACTTCTTAAACAAGTCGCCGTGATCTTGAATCCTGTAGTCAAAGCAGCACCAGCTCTGATCGACCCCCTGTATTTGATGGCTCAGGTCAGGTATTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-TTC21A:NM_145755:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128952=Apc3=PU(1.2=2.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAATTTTCCTCCAAGCCCT
R:
TGAGTAATACCTGACCTGAGCCA
Band lengths:
329-1057
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)