HsaINT0174148 @ hg38
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39125332-39126390:+
Coord C1 exon
chr3:39125332-39125532
Coord A exon
chr3:39125533-39126260
Coord C2 exon
chr3:39126261-39126390
Length
728 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
CCACCGCCGTGTTCCCACAGCCC
3' ss Score
9.73
Exon sequences
Seq C1 exon
GTGCTAATTTTCCTCCAAGCCCTCCTGATGTCCAGGAAGCACAAGGGGGAGGAAGAGACCACAGCGCTCCTGAAGGAGGCAGTGGAGCTTCACTTCTCCAGCATGCAAGGCATCCCTCTTGGCTCTGAGTACTTTGAAAAGCTGGACCCGTACTTCCTGGTCTGCATTGCTAAGGAGTACTTGCTCTTCTGCCCCAAGCAG
Seq A exon
GTTAGGGGAAGGCCTGTCTTCATGGTGGGGGTCTGGAGTACAGGTTTGGATGGTGCCCACCTGAAGGACAGAGGCAAGGACCTTACTTGGCCAGTCACAAGTAAGGATGGGGTGAGCCTTGGGCAGCTGGGGAGCCCAGTGCTCTTCAAACTTGAACATACAGCACACAGGTCACCTGGGAGGTTGTTCCAGTACAGATTCTGACTCTACAGGGGGGTCTAAAACCCTGCATCTCTAACAGGCTCCCAAGTGATATGGATGCTGCTTGTCTAGGGACCACACTTGGAAGAACAGGGCACCGGCCCATGGCCCTGCCTTTATCCGAGATGAGAATTTGGCTTCCTTTTCCGCAGAAGCCCCCTAAGAAGTATGTTAGTCTTTACTTGTTTGTCCTGCTCTTCCAGCCAGTCAGGATTCTTTGTGACCAAGGATCATATTTTTATACACCTTAATATCCCCCCAGTGCCTTGTAATGAGTCATTCAGCAAATATTTATTGAGTGCATTACTACATGCCAGATACCATTCTCGGTACTGGGGACACAACAGTGAACAAAACAAAGTTCCATAGCCTGGAGCTCGTGCTCTAAGCACTAGGTGATACAGAGGATAATAAATAAGTGTGGAATGAAGCAAAATTCCTTCACTGAGAGCATTTTCTGAGAGCTCCAGGAGTCTCTCTTAGAATAGGGCAAACCTACTCCCACCTCCACCGCCGTGTTCCCACAG
Seq C2 exon
CCCAGGTTACCAGGCCAGATCGTGTCTCCACTTCTTAAACAAGTCGCCGTGATCTTGAATCCTGTAGTCAAAGCAGCACCAGCTCTGATCGACCCCCTGTATTTGATGGCTCAGGTCAGGTATTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026:ENST00000431162:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF128952=Apc3=PU(2.3=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAATTTTCCTCCAAGCCCT
R:
TGAGTAATACCTGACCTGAGCCA
Band lengths:
329-1057
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains