BtaINT0154279 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12501788-12503322:+
Coord C1 exon
chr22:12501788-12501988
Coord A exon
chr22:12501989-12503192
Coord C2 exon
chr22:12503193-12503322
Length
1204 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
CAGACCCTTGTGTTCTACAGCCC
3' ss Score
6.58
Exon sequences
Seq C1 exon
GTGCTGGTTTTCCTCCAAGCCCTCCTGGTGTCCAAGAAGCATAGGGGGGAGCAGGAGGCCACGACGCTACTAAAGGAGGCCGCCGAGCTGCACTTCTCCAGCATGCAGGCCCTCCCCATGAGCTCTGAATACTTGGAACGGCTCGACCCCATCTTCCTGGTCTGCATCGCCAAGGAGTACCTGGTCTTCTGCCCCAAGCAG
Seq A exon
GTTAGAGGAGGGTGCTTCTTCGTGGGACGGGGAGCGGGGGTTGGACTGGTGAACAGGTCTGGGCAGAGGCAGGACCTACCTGGCCAGTCACTAGGTTGCTTGAGCCTCGGGCAGTCGGGGAACCCAGTGCTTTTCACATTTGCACAGGCAACGTGCCAATCACCCAGGAAGTGGGGCACAACCCTGCATCTCCCAGGCAATGCTGATGCTGCGGTCCAGGGACTGCATGTGAGGAGCGGGGCACTGGCCTCTGTTCATCCCAGGGAGGAACTGGGCTCCCTTTTCTCCCAATGTCTTCTAAGAAGTATTTTGGTCTTTGCCTGTTTGTCTGGCCTTCCCAGACAATCAAGAGTCCCTGTGGGCAATGATTGTATCTTACATGCCTTAATATCTCCCAAGTGCCTGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAAGCTGCAGTCCATGGGGTCGCTGAGGGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTGTGGGGTCGCACAGAGTCAGACACGACTGAAGTGACTTAGCAGTAGCAGCCTCGTAATGCCATCCCACAAATATCTATTGAGGGCATCACCATGTGCCAGATGCCATGCTTGATAGGGGGGAGTCAAAAGTGAACAAATGAAGTCCCCATTCTCAGGAGCTTATGCTCTTGGGCAAAGTAGTACAGAGTGGATGGTAAATATGTGTGTGAAGCATGAAAATGTTAGTCACTCAGTCATGTCTGACTCTTAGCTACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCTATGGGATTCTCCTGGCAAGAATACTGGAGTGGGTTGCCATTCCCTTCTCCAGGGGATCTTCCTGACCCAGGGAATTGAACCTGGATCTCCTGCGTTGCAAGCAGATTCTTTACCATCTGAGCTACCAGGGTAAAATAAAGTAAAAAAAATGAACAAAGTAACTAAAGTAAATAAAAATAAAATAGGATAAAGTAAAAACACGTGTGGAATAAAATCCCTTCACTGAGTGTTTTCTAAGCACTCCAGGAGTCTTTTTCTTAGAATAGGGCAAACCGCACAGCCAGACCCTTGTGTTCTACAG
Seq C2 exon
CCCCGGTCTCCAGGCCAGATCGTGTCTCCTCTTCTTAAGCAAGTCGCTGCCATCTTGAATCCTGTAGTCAAGGTGGCACCAGCCCTGATTGAGCCGCTGTATGTGATGGCCCAGGTCAAGTATCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(23.8=34.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTTTCCTCCAAGCCCTC
R:
GAGAGATACTTGACCTGGGCCA
Band lengths:
326-1530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]