HsaINT0174157 @ hg19
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39174543-39175819:+
Coord C1 exon
chr3:39174543-39174731
Coord A exon
chr3:39174732-39175708
Coord C2 exon
chr3:39175709-39175819
Length
977 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TATATCCGGCCTTGTCCCAGGTG
3' ss Score
7.51
Exon sequences
Seq C1 exon
GCCTTGGACCTCCAGTCTCGGATACTGAAGCGAGTTCCACTGGAGCAACCAGAAATGATTCCCTCCCAGAAGCAACTGGCAGCCTCTATCTGCATCCAATTTGCAGAGCACTACCTGGCAGAGAAAGAGTATGACAAGGCGGTACAGTCTTATAAGGATGTCTTCTCCTACTTGCCAACTGACAATAAG
Seq A exon
GTGAGTGGCCCTCAAAGCAAGAGGCTGCTTTCTCCCTCAGGGCACAATGACTTGCTGAGCTCACTGACCAGGTACAGGGGCCAGTCCCTTCTCCATTCTTCCCTGAGGAGTCACAGATATGATGGGCATGGGAGGCCAGCTAGCAGTGGCCTCTGGGGTAAGGTGTCTGCTCCTGCTGACCTGGGGCCTCACCTGCTGCAGCCCTTGGAGCAAGGCTCACCATGGATAGCCAAATGTGAAGGGTGTAGTGGGGAAGACATTGCTGAAAATCACGTTAGTCTGACATTTTCAAGTCCCCGTTGGAGGTGGGGAGATGATGAGGGTTGCAGCTGTCAGGGCACTTTGGGCATGAAGTGCAGGCTGAGCTTCCAAGAGGGCCTAGAGTTGTGAGGGAGGTGTGGCTCCAGATAAGGGAACCATAGTTGGAGTTCACGCTAACACAGTAGATGAAGAGCTTAGTGACCGATACATTCATTCATTTAATACTCAACTCATTTAACAGATACCTCATCTAATATGTGCCAAGTACTTTGCCCGGCTCTGGAGACATAGTGGGGCAAAGCTTGGTCACTGCCCACAGATTACCCTTGGGCAAGGGCATGTAGACGAGAGCACAGGCAGCGCTAATGCCATGCAATACATGCCTGCATGGGGATACAGGGCACCACTTGGAGGAATGGTACCTGCCCCAGAGTCTGGGGCACAGAGGGCTCTCAGAGCAGTGAGGCCAGAGGTGAAGCTGAAGGATGAAAATGTGTTAGCTTGGCCCAACTTTCAGAGGTTAGTAAGACACAGGGTATGACTGGAGAACTGCATGGGAGAAGGGGAAGGCCAGGACGTTCACGTGGGGAATTCGAGACATATTTTGAAGGCAGAGCTGATAGAAGTGGGGTGTGAGGGAAAGAGCTGTCAAGGATAACCCCAGGGGTTTCCCATGGTGTTTACTAGTTAGTTTATTATATCCGGCCTTGTCCCAG
Seq C2 exon
GTGATGCTGGAGCTGGCGCAGCTCTACCTGCTCCAGGGGCACCTGGACCTGTGTGAGCAGCACTGTGCCATCCTCCTGCAGACTGAGCAGAACCATGAGACCGCTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-TTC21A:NM_145755:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.2=7.9),PF145591=TPR_19=PU(36.8=39.7)
A:
NA
C2:
PF145591=TPR_19=FE(52.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTCCAGTCTCGGATAC
R:
CACAGAAGCGGTCTCATGGTT
Band lengths:
296-1273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)