BtaINT0154288 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12510214-12511374:+
Coord C1 exon
chr22:12510214-12510402
Coord A exon
chr22:12510403-12511263
Coord C2 exon
chr22:12511264-12511374
Length
861 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTGTCTCGGGGCCTGTCCAGGTG
3' ss Score
6.42
Exon sequences
Seq C1 exon
GCCATGGACCTCCAGTCTCGGATCCTGAAGCGTGTTCCCCTGGAGCGACCGGAAATGATCCCCTCCCAGAAGCAACTGGCAGCCTCCATCTGCATCCAGTTTGGGGAATACTACCTGGCAGAGAAGGAGTATGCCAAGGCAGTGCAGTCTTATAAAGATGCCCTCTCCTACACGCCTATTAACAATAAG
Seq A exon
GTGGGGTCCTTGGAGTGAGGTCCTTGTCCTTGCCTTGGGACACAAAGCCTTGCAGAGCTCCCTGACTGTGGACGGAAGCTGTTTCCTTCTCTGTGGTTCCCTGCAAGGGGCACAGACCCCTGGTGTAGGCAGGCCTGCAGATCCCAGGGCCCTCACCCACTGCAGCCCTCGGTGGCAAGTGTAGCATTTTCAGGTCCCCCTTGCAGGTGGGGAGAGGACACTTTGGCTGCTAGGGGCTTTTCTGGGCATAAAGCCCAGACTAAGCTTCCAAGGAGGTTTAGGGTCATGTGAGAGGCATGGCTCCAGGTGGGAAATGGTGGCTGGAGTTCACTCGAGAGGAGATGAAGAGCTTAGTGACAGACCCATTCATGTATTTAATGTGTTCTCATTTAACAGATTCCCAATATGTGCAAGCCAGGTACTGGGCCAGGGCTTGGAGACGCAGTGGGGCAAGACAAGGTCCCTGCCCCGGGCACTGGGTACACACAAGTACATAGGCAGTTCTAATAGCATGTGATACCCACAGGGGGGTCAGGACACTTGCGAACTCAGATGAGGGGTACTGTCCCGGAGCCTGGGGCGCAGAGGGCTTCCCAGAGGAGATGAGGTCAGAGCCGAAGCCGAAGGATCAATATGCGCTCAGTGGGCCCTGCCTCTCAGTGGTCAGTTAGAAAAAGTCATGACGATATAGTACTGGGTGGGAGAGGGGGAGAGCCAGAGACATCATCCCAGGGGGTCAGAGACATGCTTTCATGCTTTGAAGGCAGAGCTGACAGAACGTGGGCGTGCGAGGACGAGGCCTGGGTGCCCAAGCTTTCCCGTGATGTGCATTGGTTGCTCACTGTCTCGGGGCCTGTCCAG
Seq C2 exon
GTGGTGCTGGAGCTGGCGAGGCTCTACCTGCTGCAGGGACACCTGGACCTGTGTGAGCAGCACTGTGCCGACCTCCTGCAGACTGAGAAGAACCACGAGGCAGCCTCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PU(36.8=39.7)
A:
NA
C2:
PF145591=TPR_19=FE(52.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCCAGTCTCGGATCCTG
R:
CTGCCTCGTGGTTCTTCTCAG
Band lengths:
286-1147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]