RnoINT0157551 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128650568-128651966:+
Coord C1 exon
chr8:128650568-128650756
Coord A exon
chr8:128650757-128651855
Coord C2 exon
chr8:128651856-128651966
Length
1099 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
TCTGTCTGGTCTTGTCCTAGGTG
3' ss Score
10.38
Exon sequences
Seq C1 exon
GCCTTGGACCTCCAGTCCCGCATACTGAAACGGGTTCCTCTGGAGCAGCCAGAAATGATCCCCTCCCAGAACCAGGTGGCAGCCTCCATCTGCGTCCAGATTGGAGAGCATCATCTCGCGGACAAAGATTACGACAGCGCTATGAAATCCTATAAGGACGCCCTGGCCTACTCACCTACAGACAGTAAG
Seq A exon
GTGTGGAGTAACACCCTGGGACCTGGGGAATGTGGCTCAGTTGATAAAGTATTTGCCTAGCACGCACAAAGTTCGGTCCCCAGTAGCTTACAAACCAAGTAAGATGGTAGCACCTCAGCCCTTGGAAGGCAGAGGCAGGATCTGGGGGCTCCTTGCTGAGTGAGGCCTCTCTTCTCTGAGGAGCTGCAGGTGTAAAGGGGGAGGGAGGCCTCCGGGGTGGGAAGTGGCTCCGGTTGACTCCGGGCCCTCACCTACTACAGTTCTTAGAGGAAGGCTAGGATGACCATCTTTATAGACCATTTATGGATGCAAGAAAGGGAAAGATAGCTCTGAAAGCCACATTCGCCCTGTCTTTGTCACCGGGCCATTGCGGGTTCCTGCCACTGGACTGAGGGACATGGTAAGAGCTGTGACTGCCAGGCTGCGTGCGGCTGAGTTTAAAGCCAGCTGAGATGCCGGAGGGGCGTGGTTCCAGATGATGAACCAGTTCGCTAAGTTCAGGGAAGAGCCCAGCAATGGAAGAGTGATTGCTTAGCATGCACAAAGCCCTGGGTTCAGTCTCCAGCACCACATCAAACCTTTCATCTCTGCACTTGGGAGGTGGAGGCCAGCCTGTCTCAAAAATATACCTAAATATACTTATGACATGTATTGTGTGAGAACAAATAGCTGTTCATCCTTTGACAGACCCTGGGCTGGTTTATGCCAGGGACTGCTGTAGGCTGGAGACAATAGGCCAGGGCGTGAGTCTTGCCTACATATTACCCTCAGGCAAGAGGAAAGTGAAGCATGTGGGTAGTCCCAGAGTCCCCTTTGTCCCAGAGTCCCCAGGGCACAGAGGAATCCCCAGAGGAAGGAGCAGAGGCCAACGGATAAGATTAGTGGGTTAGCCAGGCCCCATCTCACTCCCACTGCTAAAACCGAACGGCAGGGAAACCTGGTGGGATCGGAGGACAAGAGCCATCCTCTGCCTGTGGCAAGGGGCCTGCTTTAGAAGCCAGCTGATAGGCCGGCTGGGAGGGAGGTCAGAGCTAAGGTGAGTGCAGGTTTTCCCGGGCCTGTGATGCAGGCTTGTTAGCTCTGTCTGGTCTTGTCCTAG
Seq C2 exon
GTGGTGCTGGAGCTGGCGCAGCTCTACCTGCTTCAGGGGCAGCTGGACTTGTGTGAACAGCACTGTGCCCCCCTCTTAGAGATGGAGCAGACCCACGAGAGAGCTGCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(7.0=7.9),PF145591=TPR_19=PU(36.8=39.7)
A:
NA
C2:
PF145591=TPR_19=FE(52.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCCAGTCCCGCATACT
R:
CACGGCAGCTCTCTCGTG
Band lengths:
294-1393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]