HsaINT0174163 @ hg38
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39137486-39138387:+
Coord C1 exon
chr3:39137486-39137710
Coord A exon
chr3:39137711-39138266
Coord C2 exon
chr3:39138267-39138387
Length
556 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
CTAACTGGCTTTCCCTGCAGTCC
3' ss Score
9.45
Exon sequences
Seq C1 exon
AAGGACAGCGTCCCTGCCCTGCTGGCCTTGGCACAAGCCTACGTGTTCCTGAAGCAGATCCCCAAGGCGCGTATGCAGTTGAAGCGCCTGGCCAAGACCCCCTGGGTGCTGAGTGAGGCTGAGGACCTGGAGAAGAGCTGGCTCCTGCTGGCTGACATTTACTGCCAGGGCAGCAAGTTCGACCTCGCCTTAGAACTGCTGCGGCGCTGTGTGCAATACAACAAG
Seq A exon
GCAAGGAGCCACACACACACTAGGGCTGCGGGATGGCGGAAAGGATTCTAGGCATTCCAGGAAGGTGAAGCAGGCTTTGCAGGTAGAGGCCATATGGAATAAGAACTAGTCGGGAAGAGGCAGGCTGAGAGGGGCACATGGGCGACAGACCAGAATAGGAATGAGGATCAAGGGCGATGGACCAGGTGAGAGGAGGTGCACAGGGGTCGTGTTATGTCCAGAGGAGGGAACACTAAAGGACAGAAAGAGATGGGAAAGCTTCATGGGTTCCAAGCTGGAGGGACTTTTGCAGGTCAGAGCAGGCCAGGAATGGGAGTGGCGGAACAGGAGGGCTACAGGGAAAGGGGTTACGCCAGTGTCTGGGGTAGCTGAGAGGAGGGCACACAGTTGGCTTCTTGCAAAGGTTGGGGTACCCCTGGGGTCCCTTGGCAGTTTGGTTTATGGCAGCTCACTTCTGTCCCTTGCCTGCTTCTGGTTCTGGTCCCAGTCCCACCCTGGCCCAGGGAACCAGTTGGGGCTTCCGCTCTGCAGAGGCTCTAACTGGCTTTCCCTGCAG
Seq C2 exon
TCCTGCTACAAGGCCTATGAGTACATGGGCTTCATCATGGAGAAGGAGCAGTCCTACAAGGATGCAGTCACCAACTACAAACTGGCCTGGAAGTACAGTCATCACGCCAACCCTGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026:ENST00000431162:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(48.5=44.0)
A:
NA
C2:
PF134141=TPR_11=PD(48.5=80.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCGTCCCTGCCCTG
R:
GGGTTGGCGTGATGACTGTAC
Band lengths:
335-891
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains