BtaINT0154294 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12513971-12514796:+
Coord C1 exon
chr22:12513971-12514195
Coord A exon
chr22:12514196-12514675
Coord C2 exon
chr22:12514676-12514796
Length
480 bp
Sequences
Splice sites
5' ss Seq
AAGGCGAGG
5' ss Score
1.4
3' ss Seq
CTGACCGGCTTTCCCTGCAGTCC
3' ss Score
10.46
Exon sequences
Seq C1 exon
AAGGACAGCGTCCCCGCCCTGCTGGCCATGGCGCAGGCCTGCTCCCTGCTGAAGCAGGTCCCCAAGGCACGCACGCAGCTGAAGCGCCTGGCCAAGGCCCCGTGGGCACTGGCTGAGGCCGATGACCTGGAGAGGAGCTGGCTCCTGCTAGCCGATATCTATTGCCAGGGCGGCAAGTTTGACCTGGCCTCGGAGCTGCTGCAGCGCTGCGTGAAATACAACAAG
Seq A exon
GCGAGGGGTGCACCGCCGTCGGGGCTGTTGCAGGGGGTGGTGTGTGTGTGAGAGGCACTGGGGCTCTGTGGGCAGAGATGCAGGGATAGCAATAAGATGAGAAGAGGCAGGACAGGAGGGGTCCCGTGAACCACAGAGCAGGACAGGAAAGCAAGGCAAGAGGAAGCGAACAGGGTTCAGCCACCTGCAACAGGGACGCAGAATGGGGAGAAGAGATGAGAAGGGCTCAGGAAATGGAAGGGTGGCATGTAAGGAGGGTTTGGTTGGGTCAGGGGGGAGGGCCTTGGGAGGTCAGAGCGGGAGGGCTGTGAGGGCAGGGGTCATTCCAGTATAGGAATAGCTGAGAAGAGGGCACCCAGTTCACCCTCTTGTCAAGGCGGGAGGTACTGCGGAGTCCCTGAGTGGTCTGGGTTACTGCACCCCCTGCCCAGCCCTTGCCCCTGCCGGGTCCCGCGCTGCTCTGACCGGCTTTCCCTGCAG
Seq C2 exon
TCCTGCTGTAAGGCCTACGAGTACATGGGCTTCATCATGGAAAGGGAGCAGTCATACAAGGACGCGGCCGCCAACTACGAGCTGGCCTGGAAGTACAGCCATCACACCAACCCTGCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(38.8=44.0),PF134141=TPR_11=PU(48.5=44.0)
A:
NA
C2:
PF134141=TPR_11=PD(48.5=80.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGCTCCCTGCTGAAG
R:
GATGGCAGGGTTGGTGTGATG
Band lengths:
310-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]