RnoINT0157557 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128654757-128655731:+
Coord C1 exon
chr8:128654757-128654981
Coord A exon
chr8:128654982-128655610
Coord C2 exon
chr8:128655611-128655731
Length
629 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAAG
5' ss Score
1.31
3' ss Seq
CTGCCCTCCCTCTCCCCCAGTCT
3' ss Score
10.13
Exon sequences
Seq C1 exon
AAGGACAACATCCCTGCACTGCTGGCCATGGCGCAGGCCTACGTCCTCCTGAAGCAAGTCCCCAAGGCCCGAACGCAGCTGAAGCGCCTGGCCAAAGTCCCATGGATGCTGGACGAGGCCGAAGACCTGGAAAAGAGCTGGCTTCTGTTGGCAGACATCTACTGCCAAGGCGGCAAATTCGACCTGGCCTTGGAGCTGCTGCGCCGCTGCTTGCAGTACAACAAG
Seq A exon
GCAAAGATCACTGGCACGGGAGAATAAGGGAGGGGTGAGCGGGGGTGGGAGGGGGGAAGGGGAGGTAGAGCCGGAGGGGGCCGGAATCAGGGGGCTGGAACCAGGACCCACGGGCCAAAGAAGGGCCCAAGGGCCATGTTTATGAGGATCAGGCATAGCCAGGAAGTCGGTGGGCTTGAGCCATATGCAAGGATTAGCTTCTGTGAGGTAGAATCATTGGTTAGAGTGGCTTTATTTTTTTACGATTTATTTATTTTTATTTATATGAGTACACTGCAGACACACTAGAAGAAAACATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTTAGGACCTCTGGAAGAGCAGTCGATACTCTTAACCACTGAGCCATCTCCACAGCCCTAGAAGGGCTTTATTTGAGAGGGTTTTGAGTAAACCAGCTTCTGAGTAAAGAATGGGTACACAGTTAACCCTTCAAAAAGCTAAAGATGCTTGTGGGGGTCCCTAATGCACTTTGGGTTCCTGATGCTCACCACCATTCACTTGCCCCCTCCTGGTCCCACCCCAAGGACCATGGTGACTGCTGCCGGGCAGAAATACTAACTGCCCTCCCTCTCCCCCAG
Seq C2 exon
TCTTGCTGCAGGGCCTATGAGTACATGGGCTTCATCATGGAGAAAGAGCAGTCATACAAGGACGCAGCCACCAACTACGAGCTGGCTTGGAAGTACAGCCATCAGGCCAACCCTGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(38.1=42.7),PF134141=TPR_11=PU(48.5=44.0)
A:
NA
C2:
PF134141=TPR_11=PD(48.5=80.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACATCCCTGCACTGCTG
R:
GCAGGGTTGGCCTGATGG
Band lengths:
338-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]