HsaINT0176410 @ hg19
Intron Retention
Gene
ENSG00000160714 | UBE2Q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:HGNC Symbol;Acc:15698]
Coordinates
chr1:154527904-154528440:-
Coord C1 exon
chr1:154528336-154528440
Coord A exon
chr1:154528009-154528335
Coord C2 exon
chr1:154527904-154528008
Length
327 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTGTGCTCCCCTACCTGTAGCTA
3' ss Score
8.78
Exon sequences
Seq C1 exon
GAGTCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCTGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTCTG
Seq A exon
GTGAGGGGGCCACAGGGTAGGGGTACATTTTGTTCTTATGAGGCCCATGCCACAAAGGCATCCTGTGAAAGGGATCCTGAAAAGTGGACGGTACACAGCTAAACATTTAGGGGATGACCTCTCGGGGGAGTTGCTTACTGAAGCCAGAGGGAGACCCTGCATCGGCCCTGGGATTGGTCCATCAGGAGACTCATTCCCACAGCCACGTGGCCCATAAGGCTTAGAGAACTAGTTATTGGTGTGGGGCCCAAACTAAGAGCTCATCCATGCACTTATCCAGATCGGAGTGGGGAAGGATTTGATGTCTCTGTGCTCCCCTACCTGTAG
Seq C2 exon
CTATTGCAGCATCTGAAGAGGATCATCTCCGACCTGTGTAAACTCTATAACCTCCCTCAGCATCCAGATGTGGAGATGCTGGATCAACCCTTGCCAGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160714-UBE2Q1:NM_017582:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.343
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(27.6=100)
A:
NA
C2:
PF0577317=RWD=PD(13.8=48.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCATACCCTGCTGTGCC
R:
CTCTGCTGGCAAGGGTTGATC
Band lengths:
207-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)