RnoINT0159279 @ rn6
Intron Retention
Gene
ENSRNOG00000020791 | Ube2q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:RGD Symbol;Acc:1305305]
Coordinates
chr2:189108595-189109131:+
Coord C1 exon
chr2:189108595-189108699
Coord A exon
chr2:189108700-189109026
Coord C2 exon
chr2:189109027-189109131
Length
327 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
TTGATGTCTCCCCACCCCAGCTC
3' ss Score
7.1
Exon sequences
Seq C1 exon
GAATCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCTGATGATCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTTTG
Seq A exon
GTGAGGGGGGCAGTGGGGAGGAGTATGTGTGTTCCTGGAGAGGCTTCAGCAATAAAAGTACCCTGTGAGAGGTAGCTAGATCTGAAAAGGGTGGTACTCTAGGTGGAATGTCTTGGGCCTGACTTTTTAAGAGAGTTGCCTACTGAAGCCAGAGGAAGCAGAGTCCTATAGCAGATCCAGGATAGATCCACTAGGAAAAGTCATTCCTATCACCACAAGGTCCATCCACTGTAGAGAACCAGCCACCATTTTGAGATCTAAGCTAAAAGCTCACACAGCTATCCAGATTGTAGTAGGAAAGACATATTTGATGTCTCCCCACCCCAG
Seq C2 exon
CTCTTGCAGCATCTGAAGAGGATCATCTCTGACCTGTGTAAACTCTACAACCTCCCTCAGCATCCTGATGTGGAAATGCTGGATCAGCCCTTGCCAGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020791:ENSRNOT00000028210:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.343
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(27.4=100)
A:
NA
C2:
PF0577317=RWD=PD(14.5=51.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCATACCCTGCTGTGCCC
R:
TCTGCTGGCAAGGGCTGATC
Band lengths:
206-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]