HsaINT0176410 @ hg38
Intron Retention
Gene
ENSG00000160714 | UBE2Q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:HGNC Symbol;Acc:HGNC:15698]
Coordinates
chr1:154555428-154555964:-
Coord C1 exon
chr1:154555860-154555964
Coord A exon
chr1:154555533-154555859
Coord C2 exon
chr1:154555428-154555532
Length
327 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTGTGCTCCCCTACCTGTAGCTA
3' ss Score
8.78
Exon sequences
Seq C1 exon
GAGTCATACCCTGCTGTGCCCCCCATCTGGTCGGTGGAGTCTGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTCTG
Seq A exon
GTGAGGGGGCCACAGGGTAGGGGTACATTTTGTTCTTATGAGGCCCATGCCACAAAGGCATCCTGTGAAAGGGATCCTGAAAAGTGGACGGTACACAGCTAAACATTTAGGGGATGACCTCTCGGGGGAGTTGCTTACTGAAGCCAGAGGGAGACCCTGCATCGGCCCTGGGATTGGTCCATCAGGAGACTCATTCCCACAGCCACGTGGCCCATAAGGCTTAGAGAACTAGTTATTGGTGTGGGGCCCAAACTAAGAGCTCATCCATGCACTTATCCAGATCGGAGTGGGGAAGGATTTGATGTCTCTGTGCTCCCCTACCTGTAG
Seq C2 exon
CTATTGCAGCATCTGAAGAGGATCATCTCCGACCTGTGTAAACTCTATAACCTCCCTCAGCATCCAGATGTGGAGATGCTGGATCAACCCTTGCCAGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160714:ENST00000292211:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.343
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(27.6=100)
A:
NA
C2:
PF0577317=RWD=PD(13.8=48.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCATACCCTGCTGTGCC
R:
CTCTGCTGGCAAGGGTTGATC
Band lengths:
207-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains