DreINT0170675 @ danRer10
Intron Retention
Gene
ENSDARG00000100766 | ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:ZFIN;Acc:ZDB-GENE-050522-329]
Coordinates
chr18:50609402-50615462:-
Coord C1 exon
chr18:50615358-50615462
Coord A exon
chr18:50609525-50615357
Coord C2 exon
chr18:50609402-50609524
Length
5833 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
3' ss Seq
GTGTGTGTGTGTGTTTTCAGCTC
3' ss Score
10.39
Exon sequences
Seq C1 exon
GAGTCGTACCCGTCCACGCCGCCCATATGGTTTGTGGATTCGGATGATCCGAGTCTGACTGGAGTGCTGGAGCGTCTGGAGGAGGTCAGGAGGGGAAGCACACTG
Seq A exon
GTAAAGCACTGTACTTTTACACCGCTGCTTACCACAGCATGCTTATTGTAGCATCTTCAACCTTAAAACTGCATATAATGCTGCCATGCACGATAAAATACAAGCAAATCCCGACCATCCGCTGACTCTCTGTTTTAGGAACGGTTTCATGTTCATCGATGATCAAATTGAAACAGCTTGTATGACTTTATCAGTGTTGTTGTTTGTGTAAATATCGAGTGAATGATGAGGAAATGGTCGTGATTGTATGTTAAAACTGGAAGTGTTGTCATGAATATAGCCAATGCTGCTGAAATTAAAACATAAATAAATTAATAAATAAAGGCTTTCATATTGGTTGAAAATGGGGCGAGGCAGTGGCGCAGTAGGTAGTGCTGTCACCTCGCAGCAAGAAGGTCGCTGGTTTGAACCTTGGCTCAGTTGGTGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCGTTGGCGTGGGTTTCCTTCGGGTGCTCCGGTTTCCCCCACAGTCTAAAGACATGCTGCAGGTGAATTGCGTAGGCTAAATTGTCCGTAGTGTATGAGTGGATGAGTCTATGAGGGTGACAGGCCCAGTCGACAGGCCGGCTGGTATGTGTAAAAAATAGTCTCTATCATATGGAGAAGTCTAAAATGGCATGTTCCAAAGAGCCGACCCCACAACCATACAGGACTACAGAAGAAGAAGAAGTTATTGGTTGAAAATGTGAACATTAGAACTGTGACTCGGTAGAAATGTAACCCCAAGAAGAATTAGCTAGAATAATCTACTATTCAGAAGGATATAGTCTCAGTAAATGATGACAGAATTAATCATTTGAAGGAATTCATTTAGTCGAACACAACACAGATGCTAAATATCATGCCTCTTTTTTTTTTAAATGTGTGACATTTCTTAAAATTATTATTATTATATTTATAAACAGTTAAAAACACAACACAAGAAATGAAATCATATAAAAGTGTAACAATTTCAAACAGAAACAATTGTGATATTTAAGAGTATCAAATGAAATAAAATACAGGAAATATATAATATTCTCATTTTGAAGCTCTAGTGCAGGGGTGTCAAACTCAATTCCTGGAGGGCCGCAGCCCTGCACAGTTTAGTTCCAACCCTGCTCCAACACACTTACCTGTAGGTTTCGAACAAACCTGAAGGACTTAATTAGTTTGATCAGGTGTGTTTAATTAGGGTTGGAACTAAACTGTGCAGAGCTGCGGCCCTCCAGGAACTGAGTTTGACACCTGTGCTCTAGAATATAGGTGTCAAGCTCAGTTTCTGTAGGGCCGCAGCTCTGCAGTTTTACTCCAACCCTGATCAAACACAGCTGAGGTGTTCAAGACTACTAGACACCACAATCAGCTGTGTTTGATTAGGAACTAAACTGTACAGAGCTGCGGCCCTCTAGAAACTGAGTTTGACACCTGTGCTCTAGTACTAGTTTTTTGCTGCTTGGTTCATTCTATCTTGTACATTGTTTATGAACCAGCGTTTCAATTTATAAATGTGTTTGCTCATGTATATTTCTTTCTTGCATAGTTATTATACCCAAATGACTAAAGAGTTCTGAGTATTTCTGCCTAGAGCTTCTATAGTGGTCCACATGACTGCATGCAGTTCAGTGGTGCTGCTTTTTAAATATGCATTATTCTGTTGCCTAGCAACTTCCTATTGGCAAATACATAACTTTACTTCATATATGTGTCTCTCTAAACAGCATATTCAGATATTCAGTGCCTCAAAATGCCCATATTTAGTAACTTTACATTAATAGGCTGTATTGCTAAAACATTGTATATTTAGGGTGATGATGACTTAATTAGTATGCCTACAGACATTCAGGCTTAAATTTAATTTCTCAACAGAAGCTTTGAATGTGAGTAGGGCATGACAGCATGACATCTTGCATGAGAATGTTCAGAATGACTGTGATGGTAATTGTAGCAGTTGTAGAATTCTGGTAGATCAAGCCTGCACATACTAGATCAGCCAGCTGCAGTTTATAAGAGCTCAAAGAGGATCCAGGTATGAGTTGACTCACTAGTGTGCACTCGGATTACATTAGCACGCTGTGAATGTTGTGTAACGCTCGACTTCATTACAGCGTCGCTAGGCTGGTAATTACTGTTTACTGCTGTTCAAAACATCATGAGTACAACACCTGGGGCCTGTTTCAGAAAGGAGGTTAACTGAAAACTCAGAGTATTTTAACCCTGAAATGAGAGAAACTCTGGGTTTTCCGTTTCAAAATGGCAGGTTTGTTAAACTCGAGAAATCAGGGTAAGTCAAGCCTGTTTCTGAAAGAGAGTTAACTTTAACTCAGAGTCAGTTACTGTGGTAACTTACTCTGTGAATCTAACCTGGTCAGAAGCTGGTTTTATTCTCTAAACTCAGAGTTTCTGTCGGTCTCCTCCCCTTTTTTTAAAGATGAAGCGGTATTTCACGCCTTAGCCTTACGTTTCCACCCACCTATTTTAATGCTCATTTTGGATACGTGCATAAAAACGATTGATAGAAACGTATGATGCACATAACTTTTTAAAATATGCATAAAAAACGCACATAACTGAGTAGGATAAACTTTTATTCGATAGAAAATGTGCGCATAAATTACGATGGAAACACTTTTACTGAACAAATTACAGTATGTACATTAAAAAAAAGATCATGATCATATGATAATGAAAATGTGTGTAAATGGAGGCTGAGAACACTGTAACACGTCTTAAATATTGTTTTAGTCATTCTAAAATGCCTTTACAGTTTCAGTATTAGTGTATATTATTAATTACCTCCGAACGTCTGGTGCGTGTCAAGAGTCTCCGCGTCTCATGGCTTCAGACGCCCCCACGTGTTCATTGTGTTTCAGCATTGTCTTCTGACATCGAGGCGCAAGTACATTATTTAGGCTAAATAAAGAATTAATTGACGCAGCTTCTTCTACCACAGTAAATTCTGTTTTTACTGTTGATATTTGGTGCCAGTTAAATCAGGAAGTGACAATTTTTTTCTCTTTGACTCGTTGGATGGAATTTTATTCGCATCTTTTATGCAATATTGCAGTTTTGCACATAAATTTATGTAATATATTTGGATGGAAACATAGCTATTGCCTACATTTTAGTCACACACAGAAGAACTGTACTAGAATGGCTTATGCTTTTTTAATAAATAATTAAATTGAATTCACCTTCGATATGCACTGTAACTAGATTAATGGGATTATTATTCTTTCTAAAAATTATTTTTAGTACTGCTTACCTTCTAAATGTTATATAAACCTCTATCACTTGATCAATAAAAAAGGCAGACACACAAGTGCACTGTTAAATCATTTAAAACTAATAAATGTATAAAAGAAAGTTTAGAAAAAAAAATATATAAACGTCACAAATTATTATACTTAAATATTTAAATACTTAAAAAGTTAAATTAGGCATTATCTTGAGCAGCTGTTTTCCCACGCTAACTGGTTGATGGCTGCTTCTTTTCAAATATATACGCTCATATTTGCTAGAACTTTGCATGAGAACATCAAGTTCAGCTGGAGAAAGAAATGGTGATCTCTTTTATAAGATATTGTCATAGTCACTCGTAATGTCTGCGCTCCACTGATAATGCCTTTTTATAGTCACGGTGCGCGCGCTTAACTCTGAGTTGGTCTACTCGAAGTTGATTGACCCAACTCAGATCAGCTGTTCTGAAACCGAAAACTCTGAGTTTTTAATCTCTCGGTAAATCAACTCAGAGTTCAAGTTTAAACTCTGAGTTGTTTGAACCTCCTTACTGAAACAGGCCCCTGCTCTGCTCCAAACCACTGCACCGTCTTTAGATTATACACACGTGCTGAATATTACTGCATTCACCCACACCGAGAGAGCTGCAAATGAGGAGGTATGATTTAAAGAGTCCCGTTTATATTCACTTTCTCATAATGAAAAGTCTGCAAAGCTCAGTGCAGTTCTGCTCTCACTAATAAAAAGAATGATTCTGAATGGAGTCACTGGAGAATCAATCAAGTTACCTGAGACTCAAGAGAATCATTCGAGTCAGCGGAGAATCAAGAAAATCAACCGAGTCACCAGAGAATCAAGAGAATCAATTAATTCACCGAATCAAAAGAATCAGTCAAGTCACCGGAGAATCAAGAGTATCAATCGAGTCACCAGAGAATCAAGAGAATCAATCAAATCCCCAGAGAATCAATCAAGTCACCGGAGAATCAAGAGAATCAATCGAGTCACTAGAGAATCAAGAGAATCAATCAAGTCACTAGAGAATCAAGAGAATCAATCAAATCCCCAGAGAATCAAGAGAATCAATCAAGTCACCAGAGAATCAAGAGAATCAATCAAATCCCCAGAGAATCAATAGAGTCCCCAGAGAATCAATGGAGTCACCGGAGACACAAGAGAATCAGTAGAATCAATCGAGTCACCGAAGAATCAGGAGAATCACCAAAGAATCAAGAGAATTAATCGAGTCACCGAAGCCTCACCGGAGATTCAAGAGAATCAATCAAGTCACCGTAGAATCCTGAGAGTCAATCGAGTCACTGGAGAATAATGAGAATCAATTGAGTCATCAAAGAATAATGAGAAACAATCGAGTCACGGAAGAATCAAGAGAATCAATTGGGTCACCGGAGAATCAATCAAGTCACCAGAGAATCATGAGAGTCTATCAAGTCACCGAAAAATCAAGAAAATTAATCGAGTCACTGGAGTCTCAAGATAATCAATCAAGTCTCCAAAGAATCTTGAGAATCAATTGAGTCACCAAAGAATAAAGAGAATCAATCGAGTCACCAGAGAAACAATCGAGTCACCGAAGAATCAAGAGAATCAATTAAGTCATTGGAGAATTGTGTGAGTCAATCGAGTCACGGAGGAATCTAGAGAATCAGTCGAGTCACCGGAGACTCATGAGAGTCAACCGAGTCACCGGAGAATCAATTGAGTCATTGGATAATCAGTCGAGTCTCAGTTCATGATTCACTAGTTACTCGATTGATTCTCCTGATTCTGCGGTTACTTGATTGATTCTCCAGTGAATTGACTCATCTGTGATCATCCGTAAATCATGAATTGAGGCATTGATGAATCGTAAATTGAGGCATATATTATAATAATATAAGTCATTATATTATTACATAGTTTTTTTTAATCTTGCATTAGTGTAAACCTGCTGTAGGAGAATTACAAAACTAATTTAGGCGAATCTCTGCTAATATGGCAGAATTAGATCACCTTAAAAGGGATAGTTCACCCAAAAATCTCATTACTCCAGTCTGTCACATGAGACTTTAGGAATCTTAATGTTAAACTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGAGGGAGCGTCAGGGCTGTTGATTGGACGGCTCTCTTCATTCTCAGTCTGGTATTCATTACACACACGTGAAATGTGATCAGCTTCTGTTGTGGTTTAGTGACTGAACGCAAACACACTGACGACTGAAAGAGGAGCAGCTGATCTTTATCACGGAAACAACAGATCTGGAGCACAAATTACCCATAATGACCTGCTAATCTCACACACGTGACCGTATGCGCATACACACAGTAGAGCTCAACATTATTAAAGCTGCTGTCAGAATAATTACTGCTCAGATATGTCAAACAGTTGTAGTAATAGTATTTGGCCTTCAGCTGAATGTTAGTGTGGCTCCATCATACTCACTGTGCACTCATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCAG
Seq C2 exon
CTCCTGCAGCAGCTGAAGAGGCTGATCTGTGACCTGTGTCGCCTCTATAATCTCCCTCAGCATCCAGATGTGGAGATGCTGGACCAGCCGCTGCCTTCAGGACATCATACACACGACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100766:ENSDART00000159481:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(32.1=100)
A:
NA
C2:
PF0577317=RWD=PD(16.0=41.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]