GgaINT0026865 @ galGal4
Intron Retention
Gene
ENSGALG00000002989 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]
Coordinates
chr10:3021708-3024284:-
Coord C1 exon
chr10:3024174-3024284
Coord A exon
chr10:3021813-3024173
Coord C2 exon
chr10:3021708-3021812
Length
2361 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CATGTTTTCTTGTTTTATAGCTT
3' ss Score
9.94
Exon sequences
Seq C1 exon
AAACAGGAATCTTACCCCTCTTCATCACCAATATGGTTTGTAGAATCAGATGACCCAAACCTGACTTCAGTCTTGGAGCGTTTAGAAGACATTAAGAAGAGCAATACACTG
Seq A exon
GTGAGTTCTGGTTGCTTTAGATGTTTTTTGGTTCAAGTTTTTTCACATTAATAAGCAATGGGTTCAGTTGAGAGTCTTATTTTGGGGTCTTTGCAAGCATAAGTTTCCTCTTCTAAAAACGTACAAACAAAAAGCAATTTGAAACATGAAGAGGAAGATGACTTAAAAATGCTTGCTTTTTCACTGTAGTCACATTTCAGCCCCAAAAAGTTTAAGGCTTTCTGAGAATAATTAGTGAAGTGCATCAGAAATTAATGAGGAAAAATAGCACTTCTAGTGTTTTCTTTGCATGGAAACTACATCAACTACAAAGGCAAGAGGACAGCTAAGGGAATGTTAAATACAGGTTTTTAGCCTGTGACCTCTGCCTAAGGAGACATATGGCAGTTAAATAGTGGAATGCACAGCCAAATCAGCTTTCTTCAGGAATTCCTTTCTACAGAAAGGGATCAGCTTGAAGCTGATGTGACTGTTGGCTTCAGACTAAAGCAAGGTTTTAGACAAGATGTTCCCTATGCTTACCTGTATACAAGATCGCTTGCATTAGGGTGGAAAATGTTTATCACAGATATGTGGGACTTGCTGCACTGAATTGCATGCAGACATAGACCACTGATGTTTGTTGTAACCAAACTGCTTCTGATATCAGAATTGTACTTGCCCATTTAAAAACTGATGGGTTGATGCAGCACCTGTGAATAGCCCATTGGCTTCTCAGGAATCAACTTTACATCGTGTAATGTCAAAATGAAGACAAAATAGAGACGGTTACTTTACAAAATCAGACTTCGGGGTCAAAAGGCTTGAGTCTGTGGGTACTGAGGGCATTTTTATCCCTTCCAGCTTTACCCTTTACACCCTCATCAAGGAATTCTGAGCAGCTTGCACACGCCCTTCCTGTGGTAGGGTAGAAAGGATAAGGAACTGCCTGCAGAAATGAATGCCAAAACTAATTTATATCAACTTAGCGTTTTGTTTTTTTTTTTTTAAAGCCACAAACCCCATTTCACTTAACTTCAGCTAAAGTCCATTGTTTCACGCTGCTTTGAAGTCATAATAAAGGTTACTGTTAAAACAGTTAAAATATTGAATGAGAAACAACGTTAAGCTCTCCAGGAGCTCAGCAGAGCAAATGTGCTAAATGCATTTCACCAGATCTCTGAAGTCCTTTGGTATTATTCTGCCCTTCTGCTTGCTTTTCAACTTCTGATGATTATCAGCTGTTTGGGAAGCTGAAAAACATACTCCTCAGACAGGCTGTATGTCGAGGCTTTTCACGTGACATGGTAAATTTTGATGTGGTAAAAATTCTTCTATGATACTTTCATGTTAGCCAAGCACGTGAAGTTAGGCAGGAGATAGGTTTAAATTATTAATACATGAGGGAAATCTGCTACCCCTTTTCATATAGTCTCTTTGTTTTCCACTAACACACACAAAATCATGCTAGGCACTGCTTAGAGCATGAGGTTGACTCCCAGATGTACCTTCTGGCCCAAACTGTCCTATAATTCTTTCATACATATGAACAAAGCATAAAGGATAACGATTAAGGTGATCCATGGCCAAAGGAGCAAGGGTATGAAATGAATTCCTTCGGGGAGGGGAAATGTAGCAGAAGGGAAGACTGGTAACAAATATTTCACTTTAGAAATTAAACTGCAATTTTTCAGTTGCATTGAGCTAACCCTGAATTGCAGACCTCTGCCAAGGAAGGGGATCCCTCCTCTCAGCTGCATGTTCCCACGTCCCTGTTTGTGGTGAAATTTGTGCTTTTGTGCTGAAGTGCATTAGGAATCGATCTGTCTGGAAGCCTGCAAGTTGCTGCATTGCTGTGTGATTGCTGTTGCCAGCGTTTCTAGGTTTGCTTCTAGAGCTGCCCAGCTGTGTCCTGAAGAGGGATCCAGGATGTGGGAAATTAAATTGTTTCTTGTTGGTGTGTGGGTTTTGTTGGATTTTGTTTTTAAAACATTGCTCTTTAAACTGGGAAAGTAGAATGCACCAGCATGTCCTGAGGAATACAGCCCTTTGATTACTCCCAAGTGGTTTGTGGCTCTGAGATCTCTGCCTGAAATGAACTATACTGCCAGAGCAGATAATCCTTTTGCTCACTGCTTTTTTTGTGGCTTGATGCAAGAAGAAAGTAATAAGCCATCTTTAACTTCCTGTGTCTTTGGTATCCCATCATGGTGGCTTTTATTATGACAACTGCAGGCAAAAAGTGGTGTCTTTATTGTAGTACCTGCAGACTTAAATGCCGTAGGCTGACTGAAAGTTAATACCAACCTGCAAAGGTACTTTAAAATACATTCTTCTGTGGCTTGGTTTAAATGGATGCTTTCATGTTTTCTTGTTTTATAG
Seq C2 exon
CTTCTCCAGCAACTGAAGCGATTAATATGTGACCTCTGCAGATTGTATAATCTTCCTCAGCATCCAGATGTTGAAATGTTAGATCAGCCATTACCAGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002989:ENSGALT00000004731:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]