MmuINT1034340 @ mm10
Intron Retention
Gene
ENSMUSG00000032307 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr9:55162968-55168307:+
Coord C1 exon
chr9:55162968-55163069
Coord A exon
chr9:55163070-55168202
Coord C2 exon
chr9:55168203-55168307
Length
5133 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
TACTGAAATATGTTTTGTAGCTC
3' ss Score
3.94
Exon sequences
Seq C1 exon
GAATCTTACCCATCTTCTTCACCAATATGGTTTGTGGACTCTGATGACCCAAATCTGACATCAGTTCTGGAACGCTTAGAAGATACTAAGAACAACAGTTCG
Seq A exon
GTAAGGAGATGAACCAGACTTTCCTTTTTCCTTCTCATGGTCTTATGCAGAAACATTAAATATTAAGCAGTTATATGATAAAAAATTTATCATACTAAAATTTACTCCATTTATTTCCTTTTCCTGATAATTTTCCATCCCTTCTAAGATCGTAATACAAGTTGTTATAGCATGATTAATAATGACAATTTTAGCAAGGTTACAGACCTTTTGAAGTCCATCTCCCTCTTTCTACATGTACATTCTATTTACATTAGGAATTGAAGTTCTTTTTTCCCCCCTTCATTCTTGCCATTAAACAAAGCAAACATTTTTGATAGACTGTTGGGTGAGGTGAGAAAGGACAAAGATGGTAAGTGAGGTAACATAGGATAGCATCAGGATTTTTTTTTAACTTTTTTTTTTTTAATTATATATATAAGTACACTGTAGCTGTCTTCACACAACCAGAAGAGGGCATCGGATCCCATTACAGATGATTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCGGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAACATCAGTGTTTGTGTTAGGGAATTCCTTTGCTAGTTAAGGCCCACAAGTCTGCAGTAAAAGCCAAATTTATTGAAAAGGTTTGTTGGTTTGTTTGTGATCCATAGTCATCCCCCTGTGCATACATTCCAAGACTCCCAGTAGAAGCCTGTGGGTATCTCTGAACTGTATAAAAACATGTTTTCTTCAGGACACTGCATATGAAGAGATTAATAGTAGCTAGTAAAGTAGAACCAGTGACAATGGGCTCCATGTTAAAGAACTATAAACATTGTGTACTTTCAGTTGGTTTATGGGGACCTTGATAAACCCTGGAAAGCAATATTTATCTCTGGGTTAGAGGGGGGTGCTTTGTAAAGAGATGTATCTTTCTAGGCTGGGAAGATGGCTCAGGAGTTTAGGACACTTGCTGCTCTTACAGAGGACTTTAGGTCTGTTCCCAGCACCCAAGTTGCAACAGCTTACGAGTACCTGTAACTCTAGCTCTGGGGATCTGATGCCTCTGTTCCCTATAGGCACTGTACTCAGGGGTACAAACTACACACAATTAAAAAATAAAAATCTTATAAAAAGTATCCTTTCCTTTTTTTAAATATTAAAATGTTTTATTCTTTGATTGTAAATATCTAAGTACCCATTGTAAGAAAACTATTAAGTTGTAGATAAAAAGAGGACATTTAGCTTTCTTATAATTTTCTACCTAATATAACCACTGTTGACATAATGGATATTTTCTGCAGTTTTTTCTTTGTTAGAAAATACATATGCTATTTCATATGTTTTTAGATAGTTGGGGTCATGTCTGTAATCTTACACCCCTTTTGAACTTACTGTTTTTTCCATATTAGTAAATCCTTATAGAACATAATTGTTCTTTGTAGATGTCATGATTTTTTAAAAATACTCCTCTTAAACTCATATAAACTGCAAAAAAAAATGAGCTGGAGAAAAACAATTAATTTGTTGAAGATCTGTAATAACTCAAATGCTGCTTATTACCAAATAGAAGATACAATGATATTTTATTGATGATTGCAACAAATTAAACACCTAGGGTAAATTTAAATATGGGAGACTTATATGAAGAAAACAACAAAATTTTGCACCAAAGAATGTAGACTTAGATACTGTGGACAGACAGATGTCTGAGGTGTGACAAATGCCACTTATCCTGTGTCCTAATATCTATAAATCTAATGCAGTGTCACTGAAAATGATTTATTTATTTTGGTGTTTAAAGACAGGGTTTTGCTATATAGTTCAGGCTGTCCTGGAACTTGCAAGCCTCTTGCCTTAGCCTTTCCAGTACTGGGATTATAGGCTATGCCGCCATGCCTGAGAGCCATCATATTTGTTTCTGGTATTGTCAGAATGACTCAAGAATAAGTAATAAAATACAAAAGTTTAAAAGGTAAAAAATTTGCCCAAACAGTAAATGAAATAAAATATTAACTATTAGAACTAGACCAACAGGCAATAGAAATTTAGAAACAGCCATGCAAATGACAATTTAGAATAAGTAAAGCTGGCGTTTTAACCCAGGAAGGAAGAATCTTTCTATAGATAATTTTAGAACTGGCCATTTTGGGAACTTAGACTCTTTAGCTCTTTGTCTTGTCAAGGTAAATGGTTTAAACATGTTCTTAAAATTAAGAACACTGGGGCTGCTGCAGTGGCTCAGCAGATGAAAGCATTGCCTCAAGATTGATGACCTAGCTTGGGCTCCAGGACCCACATGGGAGAGAGAGAGAGAACTCTTCCTACAGCTGTCCTCTGACTGCCACACTGTCATGGCACATGGCATCCCTCGCTCTCCCAACCTCCATAAGTGTAAAGAAGTTCTAAAACAATGAAGAATATAAGTTTCAAAAGTTTGTAAAAGAGTCCAGATCTTAAGAGCCATGAAACTCGGAGTAATTAAACCCAGACAGGTACATGTTTCATTTTCAGCAGACTGGTGATGGGAAAGACAGACAGACATAGCTCTCTAGCTGTTCCTCCTTAAATTGCTTATGAGTTAGGCCTACTGGCACAGGCCCATAATCCCAGCTACTTGGAGTTAAGGCATGGATATTGCAAGGTCAAGGCCAGTCTGGTCAACAGATTGAGATCCTGTCTCAGAAGTGAAGATAGGGTTGAAACTATAACTCATTGGGAGAATGCTCACCTACTTTGTGCAGGGTCCTAGGTATAATCCCTGATACTAAAAAAAAACCCCAAAAAACAAAAAACAGAAAACAAACAAAAAAAAAACCTGTGTCAAGTTAAATGGAATAGGGCTTATATTGGATCTAATTATAGAAAGTAAGTACATTTACCTGAAGGAAAGATACACTTTCACTCTGATAGATAGCCTCTGCCGATTTCTCATAGCCTGGTTTCTAATAACCTTGTTTTGTTTTGACTTTTTAGTTTACTTACTGGAGTAGAGAATCTGCCGTTGTATAGACATTTCTTAGCTGTCCAGTCCAGTGGCTCCTTTTTAGTACTAAAGCATTTTTCCATGGTTGAAATTTTGTTCCATCAACATGTATTACTTAATGCCCACCAATAAAGAGCTGGTTAAGTTACTCCAGCTTAGTAAAAAAAGAATGCAGCCAGCCCTTTTCCATAGTACACATTGCAAGATATAAGTAAAAAACAAGGCATAGAATATTGTGTAATCTGTCCTCTTTTGTATACAGTATTGTACAATACATATTAATGATGGCTTAGCTGTGCTTGCATTCTCCTTCCTGTAAATGTAGGAAGCTGTTAACAGAACACAGAAAAATACTTTAAGAGTATCGATTGACTTCTCTGAAGCTCTGTGATAAATGATGTGTATTCAAAGCCAAGGTTTGTCTGTCCTGTGCTAATTGATAACCTAGTGGGGACCTCTATGAGACCACCATTCCTTGGCTCTCTTACTATCTCGTCTTGGTCTCCTCTGAGATGCTCTTCCTTGGTATGTCTCTTTATTATCTTTTTATTCTGTGTTTTCTCTGTGCAAGCTCTTTTACTCTCATTACTTAAGTCATACTTTATTTATTGCAGAGATCCCTAAATCTGTATCTCTAGCCAGAATGTATCTTCAGAGGTTGAAACCCATACACTTATGTTATTGATCCTCTCTATCTAGGGGATCTTGCTTAGATGTGCCATGGGATGTGCTTGTCAGTTTCAATTTGTCTCCATCTTGTTTTCCCTCACTAATTCTCTCCGTGAAAACGAAACAATGATACTGGTCATCTGTGCCTGGCCCTGGGAACTTAAGAGTTCTTTTTTATACTTCTGTTCCCCAAACCATAAACTCTAGTAACTACCAAAAACTTGTTCACTTACCTAAATAGTTTAGACCCTCCCTGTGATCTGAGTTTCTTCCACAGTCCCTGAAGAGGAGGGAAGTGTTAAAAGTTAAACTTCCTGGAAAATAGACTCCCTGTTTTTCCTGTGGCTTGGTATGGAGCCATCATACTGCTATGACCTATAGCACTGCTGCAGGGTCCTGAGGTGGGATCCGCGGTCAGGGCTGTTTCCTGGCCATCCTGTCATCTCATGAAGTACCTACCTACACACACACATCCACAGACGTGGCGGCCCTTTGTTTCCCTTTGAGCACGAGGGCATTTGTTTGATCTAATTTAGTGCTTAGCCTTCCTCATGTCTACTTGGAAGGGCTTGCTTGTTCTTTGCTGGACTTAACCCATTCTAATCCTGTTCCTGTTTTCTTAGTCCTCCATAAACCTGCTTCTTCTTCATGTCTTTTCTTCATCAGAGACACTGAGCTAACTATTCCTGCCCAGTGAAGTAAGTTGCCTTATCAGCTCCCATCTGAGTCTTAAATATTGCTTATCTTTTATGTTGAGGAAAAACCCTACATAATGAAAAGTATGTTTGCACAGTTTTCCTTGTTTGCTTCCTTAAAGTAAATATACCTACAAAAATTTAAAATGGAAATTTAAACAGCTATTCTAATATGGCAGTTTTGCTAATTTTTTTTTCTTTTCTTTTGGAGAGGCTTAATTTTAATTACTCCTTACTGTCATGAGACAGCCTTCATTTCTGTTTTGCAGATGGCAGAGACTAAAGCCAGGGTTTAGGTATATGCAAGGTTATTTATTCTAGGCTGAGTCTACTAGGCCACAATTGCCTTATGGTTTTAAATGAATCTGATTGTTGCAAATGTAATTTTATAATCCATATGCAACACTTTCTTTAGTTTTTTGGTAGTCTTACGAATGCATTAATGTTCTGTTGTTTAAAAAGCTGCAAGTTTCTAAGATTAGTTAGCAACTAGACACTAGGCAGTGTCTGACCCTTCCTTCTGTGCCTTTTTGTTGGTGTTACCTACTAGATACCATGCTATAAGGACATACTAAGCTGTAATAACTTTTCTAAAATCGTGATTTTCTTACACCAGCAGCTCTAACACGTATCAGAGACTGCTTCCATCTATGGGCTGCAGTTAGCAGGAGCGCATTTTCCTTTCCTTCTGGATTGACTAACAGTAGTTGTAGCATTATTCAATGTCGTCTAAGGGCTCTTTAACATAATGCTTATTTACTGAAATATGTTTTGTAG
Seq C2 exon
CTCCGTCAGCAATTGAAGTGGTTGATATGTGACCTCTGCAGATTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032307:ENSMUST00000059555:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(28.4=100)
A:
NA
C2:
PF0577317=RWD=PD(14.7=48.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types