HsaINT0176422 @ hg19
Intron Retention
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:19248]
Coordinates
chr15:76146727-76152323:+
Coord C1 exon
chr15:76146727-76146828
Coord A exon
chr15:76146829-76152218
Coord C2 exon
chr15:76152219-76152323
Length
5390 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TACTGAAATGTGTTTTGTAGCTT
3' ss Score
5.04
Exon sequences
Seq C1 exon
GAATCCTATCCATCTTCTTCACCGATATGGTTTGTGGATTCTGAAGACCCAAATCTGACATCAGTTCTGGAACGTCTAGAAGATACTAAGAACAACAATTTG
Seq A exon
GTAAGAAAATAAGCCAAGCTATTTTCTCTTTTCCTCATGAACATTACATATAGAAATTAAATGTTAAGAGATAATATGATATAAAAGCATGATTAATGATTATAATCTTGTAGGAATTAAAGACTAGTTTGTTTGTTTTTTTTCCTTCAAATTCTATTTACTACCTGGTCTCTCTTTTATTTCCCACATGTATAACCTTAATTTAGATTACAAATTAGGGATCTCTTTTTCCCTGAATTCTAACCATTAAGCCAAACAAGCATTTTGGGTAGAGACCACTAGCCAAGGTGGGAAGCAGAAAAAAGACCAAGGTAGGAGTGAAGGGAGAGATGGGGAGAATGACACCAGAACTAGTATGAGGGAATTGCCTTTTCTTTCAAGGGTCTGTAAGTCTGCAGTAAAAGAATAGAAAGTTTTATTTTTGTTTTTAGTATATAAAGAAATATAACTTTCCATGTTGAAAAAGTTTTTAATGCTTTTTTTCTTGATTATAAAACTCATGAGCAAGCATTATTGAGAAAATTAGTAAAATATAGACAGGAAAAAAAATTAAAATCTCCCATAATTTCTCTACCTAATATAACCACTGTTGACATGATGGTTATTTTCTACCAGTATATATTTTTCCTTTGCTAGTAAAATACATATACCTTTATACATGTGTTTAAATAGTTGAGGTCATGGTCTATATAGTTTTACATCATTTTAAAAAACATTTACTGGCCAGGTGTGGTGGCTCACGCCTGTAATCTCAGCACTTTAGGAAGCTGAGGCGGGCGGATCACTTGAGGCCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCCTGTCTCTGCTAAACATATAAAAATTAACTGGGCATGGTGGCGCATGCTTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAATCTGGGAGACAGAGGTTGTGGTGAGCCGAGATCACGCTATTATACTCCAGCCTGGGTAACAGAGTGATACTCCATCTCAAAAAAAAAAAAAAATTACTGTATTTTCCCATGATGTCATACAGTCTTTATAGAAAAATAATCATCATTATTTTCAGCTGACATGATTGTTTACCTGAAAATATTCAGAGGAACCAACTGAAAAAAAGAGTTTTTAAGATTACTGGTTGAAAGCTCTGTTACATAAAAGTCAATAGCTTTCCACAATTTTAGCTATAATCACATTGAAGGTATAGTGATAAAGTATTTTTTTAAGTATTTCAACAAAAATTAAATACCTAAGAATCAACTTAGATGTGCACGACTTTTATCAAGAACATGACAATTTTGCTGAGTGGAAGGAAAGATTTGCATTCTGTGTTCCTGGATGAGCAGATTTCATGTTATAAATATGTCACTTATCGCCATGTCTTCATATTCGTAAATGTAATTTCTGCTGGGTGTGTAGTGGCTCATGCCTGTAATTCCAGAACTTTGGGATGTTGAAGCAGGCAGGTTGCTTGAGCTCATGAGTTTAAGACCAGCCTAGGCAACATGGTGAAACCTGTCTCTACAAAAAATACAAAAATTAGCAGGGTGTAGTGGCACACACTTGTAGTCCCAACTACTGAGGAGGCTGAGGTGGGAGGATTGCTTGAGCTTGGGAGGTGGAGATTGCAGTAAGCCTAGATTGTGCCTCTGAACTCTAGCCTAGGTGACGGAGTGAGACCCCGTCTCAAAAAAAAATGTATATATATATGTGTGTGTTTATACATGTATGTGTATATGTGTATATACGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATAATGAATTTCAGTACAAATCCCAGCAGATTTATTTTTGGAAGTTGACAAAATGACTCTAACATTTGTTTAAAAGGGTAAATGATAAAAAAATAAAGAATAGACTTGTTCAACCAGATGTTCAATAAAATGTTGTATACTAACTCTGTTCCAGACAGATAAAGGCAATGGAAATTTAGAACCAGAGTCATGCAAATGAGAATTTAGTATAAGGTAAAGGTGGTATTCTAACTTAATAAGGAAAGGCTAGATTATTCTGTAAACAGTCTTAGGAAAACTATTTGAGGAAGTTTGAGTCTCAACTCTGATTTTTGTCAAAATAAGTTATAGTTGTATAGTTGGTTTAAACACATCTATTCTTAAGAACAGAAGGCTGGGCATGATGGCTCACGCCTGTAATCCCAGAACTTTAGGAGGCCCAGGCAGGCGGATCAGTTGAGGTGGGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAATTTAGCCGGGTGTGGTGGCATGTACCTGTGATCCCAGCTACTTGGAGGCTGAGGCAGGAGAAGTGCTTCAACCTGGGAGGCAGGTTGCAGTGAGCCGAGATTGTGCCACCGTACTCTAGCCTGGGCGACAGAGCAAGACTCTGTCTCCAAAAAAAAAAAAAAGATATTTTAAGAGTTAAGGCTGAGGCTTGGCACAGTGGTTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGGATTGCTTGAGCCCAGGAGTTTGAGATTAGCTTTGGCAACATAGCAAGACCCTCTTTCTCTCTCTCTCTGTACACACACATGCACACGTACGTACGTATGTTAAGGTTTGTATGGAGAGCCATGAAGGTAAGAGGTAAAAATTAAAAGCTAGATGGACACATGTTTACATCCCCAGCAAGGGGGTTGATGGGAAAGAGTGGTAGACATAGTTCTGTTACTGCTACCTCCTTTTAGGAAGTTGCTTCTGAAGATCTAAAGATAACGGTTTTGTAATAGCAAAAATGAGTTATTTTTCAGTATCTAAAATATTACATAAACATGTTCATAAGGTTAAATGAAATAGGATATAAAATTGGGCCTAGTTTTTTAAAAGTGAATATATTTACATGAAGGAGAAAACAACTCACCTCCCACTCTTGCAGCCTCTGCCAGTTTATCAAAACCTAGTTTCTTGAGAGAATAAGCTACATGTCTTCACCTTTTTTCGCTGAAGTTATTATAATCTGGATTCTGCCTTCATCATTGCACTAAAATTTATCTCCTAGTTGCCAAAACTAGCGGCTCCTCTCTTAGTCCCCAAATTGACCCCTCTGCAGTATTTTGATACTGTTGATTGTTCCCTTGTTGAAACATTCCTGCATTCTTAATGTCCACCAATAAAGAGTTGGTTAAATAAAAATCATAGTGTATAGTTTTATAATAGAATATTCTGTTGTAGGCAAAAAAAAAAAAAATGCAGCCATTTTTTCCATAAGAGCATGTGCAGATTTCTAAGATATATTAAATGAAAAAGCAAGGCATAAAATATTGTGTATAATTGGCCCCTTTAGTATATAATGTAAAAAAAATCTATATGCTTGTTTATACTTTTTTCTTTCCTGGTGGGTACAGGAAACTGTCAATAGTAGAACACAATTAAGAAAAATTGGCTTCTGTGTCAGGCTCTGTGATAATTGAGTATAAAAGACAAGGCATGTCCCTGTCCTCTGGGAACTGATAATCTAATGGAACTTCCATCTGATTACTGTCTTGTTTTGATCTTATCACCCTGCCTTGGTCTCCTCTGATCTCTTCTCCCTTGGCCTACTTCTTCTCTTCTCATTCTGTGCTTTCTCTGAGTAATATTTTACTCCCATTACTTTAGTCATGATCTCTGTTCTAGGGATTCCTAAATCTGTATTCATCTCCAGAGTTTCAAACCCATATATCTGTCTGTAAATCATATATGTTAGGGAATCTCACTTACAGTGCCATGGATATTCAAAATGATGACGTTTAAATTTGCGTTTACCCACCTCCTAGCACTCTATCAGCCCCGTGTTTTTTCTCAGTAATTCTTGTGATTGTGAGTGGGACAAAATGAAATAATCAAACTAGTCACCCATACCCAAACCTGGGAACTGTCTTAGCGTTCTTTTATATACTACTGTTCTCTGACCCCCGCCCCCCGCAAACTAGTAATTTTCTAAGACCTGTCCTTCTGAATGTCTCTTACTATTTTCCCTGTGATCTCAGTTTCTTCCTCCCATCCCTCAAATGCTTTTTTGGTGTGTGGGGGAAGGGAGGAAAATTGAAATTCGTGGAGAGTGTACTACCCTGTCTTTCTTGTTGCTTGGTATGACTCCACTACCCTGCTGCCTCTCTCCCCAGCACTCCTGGAGCCCCTTCCGTGCCAGAGGCCAGAGTGTCTAGGTCTGTGTCCGGATTGCTCTGCCTCATCTTCATTATGCACTTAGCACGCAATAGAGTGTATTGGGTGGATATCAAATCCACACTGGAGCTTGGTTTCCGTTTAAGCATGAAGATTTTTGTTGGATCGTAATTTACCGTTCAACCTTCCTCATTTTCATTTGCTCCGTTGTCCACTTTGGGAAAGCTTATTCTTTGCTTCGTTAACCCATTCTAATCCTATGTCTTCTTTCTTTGTCCTTTGTAAACCTGCTTCTTTCTCTTCATCTCTTTTCTTGGTCAGAGCCACCTAGGAAACTGTTCCTGACCGAGTTAAGTGAGTTGCCTTATTAGATCCCATTTGAGTCACGTTATACATTGAAAAACATTTTAAACAATGAACACCATACTTGTGCACATGATTTACCTTGCTTACTTGTTGAAAGCAAATATGCTTAGAAAACAATCTGGACTTAAACATGGAAATTTACAGTTATTCTTTGCAGTTTTCCTAGTGAATTATTGTTATTTTTTATACAGACACTTAAGAGCCTACTAAATATCAAGTGTTACAGGTTTCATTTAATCTTTACCATTCTGGGAAAGTTTTCATTTCTTTGTTTTACAGATGGGTAGACTCATACTCAGGGAATTAGATAGGATATCCAAGGTCATCTAGATTGCCAGGCTCTGTCTACTAGATATTTGCTTCTGTATTTTTAAATGAATATGACTGGAATATATAATTTTGTAATCCATCTGTAACAACACTGCCTGTGTGTGTCTGGGTTATTTTTTCTGTTATTTTTTGTTTTTATTTTTTTGGTAGCCTCATTAATGCATTAATGTTCTCTTGTCTGAAGTTGTAAGTTTCTCAGAAAACGGGTTAGCAGTGAGAAATTGGACAATGTCTGGAACTTCCTTCCTCTGCCCTTATTGTTGTCATTCTGCTAGGTATCAGTTGTAGTGATTATACCCCAAGCCATAGTAACTTTCTTACACTAGAGGGTCCTGAAAATATTTTAAAGACTATTTTTTAAATCTGTAAGCTGCAGTTGAGCAGTAACAAACTTTTTCATTTCCTACTGGATTGATTACAGTAGTCATAACATTATTGATGTCTTCTAAGGGCTCTTTAACATAATGCTTATTTACTGAAATGTGTTTTGTAG
Seq C2 exon
CTTCGTCAGCAATTGAAGTGGTTGATATGTGAACTCTGCAGTTTATATAACCTTCCTAAGCACCTGGATGTTGAGATGCTAGATCAACCACTACCCACGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-UBE2Q2:NM_001145335:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(28.4=100)
A:
NA
C2:
PF0577317=RWD=PD(18.1=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)