BtaINT0156221 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007515 | UBE2Q1
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 1 (UBE2Q1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206320]
Coordinates
chr3:16082641-16083184:+
Coord C1 exon
chr3:16082641-16082745
Coord A exon
chr3:16082746-16083079
Coord C2 exon
chr3:16083080-16083184
Length
334 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
ACTGTGATCCCCTACCCCAGCTA
3' ss Score
5.27
Exon sequences
Seq C1 exon
GAGTCATACCCTGCGGTGCCCCCCATCTGGTCAGTGGAGTCCGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTCTG
Seq A exon
GTGAGGGGGCCAAGGTGTTGAGGAGGGAGTACATTTCCTCCTGTGAGACCCATGCCATGAAAACATCCTGTGAAACGTGTGTCTGGAAAGTGGGTGGTGCAGTAGCCTGAACATTTGAGGCAGACGTCCTGGGGGAGTTGCTTCCTGAAGCCAGAGGGAGAGCCCTGCACCTGCCCCAGGATTCGTCCCGTAAGCTCTTCCCTACAGCCCTGGGGTCTGTGAGTTCCAGAGAACTAGGTACCAATTCGGGGGCTGAGATCAGAGCTCACCTGTGTACCTGTTGGTATTGGGGTGGGGAAGGAGTGTTTGATGTCACTGTGATCCCCTACCCCAG
Seq C2 exon
CTATTGCAGCATCTGAAGAGGATCATCTCCGACCTGTGTAAACTCTATAACCTCCCTCAGCATCCAGATGTGGAGATGCTGGATCAGCCCTTGCCAGCCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007515:ENSBTAT00000009889:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.343
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(27.6=100)
A:
NA
C2:
PF0577317=RWD=PD(13.8=48.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCATACCCTGCGGTGC
R:
CTGGCAAGGGCTGATCCAG
Band lengths:
202-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]