HsaINT0184667 @ hg19
Intron Retention
Gene
ENSG00000204859 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:4930]
Coordinates
chr1:6640063-6641359:+
Coord C1 exon
chr1:6640063-6640196
Coord A exon
chr1:6640197-6640600
Coord C2 exon
chr1:6640601-6641359
Length
404 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTTCTCTCTCTTGACTCCAGGAG
3' ss Score
9.46
Exon sequences
Seq C1 exon
CGTCACGTCCGGCGCGGAGACGGTGGAGTCTCCGCACTGTCGGCGGGGTACGCATAGCCGGGCACTAGGTTCGTGGGCTGTGGAGGCGACGGAGCAGGGGGCCAGTGGGGCCAGCTCAGGGAGGACCTGCCTGG
Seq A exon
GTGAGGAGGGCGCGGGGTGAGGGAGGGAGGGGCTGCGGGCCGCCGTGGCTGCCTTCCGCTCGGCCGCTCGGGACCTGTGGGCGCGGCGTGGGCTTCGCTCACCTGTCCCCGGCTGCCGCCCTCCGCCGTCCGGGATCCTCTCACTGTGCCGGGCCAGTCCGTTCGCTCTCATCCCATGTCTCCTTTCCCCAAACTTGGATTTTTCTCACCAGGCCCTTCTTCACGACCCTGGCCCCCCATCCAGCATCCCCCCTGGCCAATCCAATATGGCCCCCGGCCCCCGGGAGGCTGTCAGTGTGTTCCAGCCCTCCGCGTGCACCCCTCACCCTGACCCAAGCCCTCGTGCTGATAAATATGATTATTTGAGTAGAGGCCAACTTCCCGTTTCTCTCTCTTGACTCCAG
Seq C2 exon
GAGCTTTCTCTTGCATACCCTCGCTTAGGCTGGCCGGGGTGTCACTTCTGCCTCCCTGCCCTCCAGACCATGGACGGCTCCTTCGTCCAGCACAGTGTGAGGGTTCTGCAGGAGCTCAACAAGCAGCGGGAGAAGGGCCAGTACTGCGACGCCACTCTGGACGTGGGGGGCCTGGTGTTTAAGGCACACTGGAGTGTCCTTGCCTGCTGCAGTCACTTTTTCCAGAGCCTCTACGGGGATGGCTCAGGGGGCAGTGTCGTCCTCCCTGCTGGCTTCGCTGAGATCTTTGGCCTCTTGTTGGACTTTTTCTACACTGGTCACCTCGCTCTCACCTCAGGGAACCGGGATCAGGTGCTCCTGGCAGCCAGGGAGTTGCGAGTGCCAGAGGCCGTAGAGCTGTGCCAGAGCTTCAAGCCCAAAACTTCAGTGGGACAGGCAGCAGGTGGCCAGAGTGGGCTGGGGCCCCCTGCCTCCCAGAATGTGAACAGCCACGTCAAGGAGCCGGCAGGCTTGGAAGAAGAGGAAGTTTCGAGGACTCTGGGTCTAGTCCCCAGGGATCAGGAGCCCAGAGGCAGTCATAGTCCTCAGAGGCCCCAGCTCCATTCCCCAGCTCAGAGTGAGGGCCCCTCCTCCCTCTGTGGGAAACTGAAGCAGGCCTTGAAGCCTTGTCCCCTTGAGGACAAGAAACCCGAGGACTGCAAAGTGCCCCCAAGGCCCTTAGAGGCTGAAGGTGCCCAGCTGCAGGGCGGCAGTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204859-ZBTB48:NM_005341:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.458
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=45.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCTCCGCACTGTCG
R:
CCCCGTAGAGGCTCTGGAAAA
Band lengths:
349-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)