MmuINT0177731 @ mm9
Intron Retention
Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:151400497-151401780:-
Coord C1 exon
chr4:151401652-151401780
Coord A exon
chr4:151401169-151401651
Coord C2 exon
chr4:151400497-151401168
Length
483 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
ATGTTTGCCTTCCCTTTCAGATT
3' ss Score
12.79
Exon sequences
Seq C1 exon
GTATGTCACATCCGGCGCGGCGGCGGTGGCGTCTCCGCGCTGTGGGCCGGGCAGTAGTTAGTCTTGTGGGCGGTGGAAGTGGTCTAGGCCGGAGCAGTGAAGCCGGTGTGAGCCGGGAGGACCGGCGGG
Seq A exon
GTGAGGAGGGTGCGGGAGGGAGGTGGAGAGCCGCCTCGGGCTCTCAGGAGCGTGTGGCCGCCGCCTTCCGCTTGCCGCCCGCCCGCGATGTGCAGGCGCGGCGTGGGCTTGGGTCACCTGTGCGCAGCCGCCGCCCTGCCCTACTGGCTGTCCGTTGGGTGCTCTACAGATCAGCTGTCGTCCACGCTGGTCTAGCCCCAAACTCTCATTTTCATTTTTTCCCCACCAGCACCCTATCCCGACTGCCCCTGTCCTGTCTCCCGCCATGCACTTCCTCTCCCGCTCTCTCCCCTCCGGCCAACCCATGCCGCTCCCCGCCCCCAAGACTCCACTCTGGCTGTGTACTCTGTGTGCACTTTCTAACCTTGACCCAAGCCTGCATCCCGACATGGGTGGATGTGCAAGTGTCCATCTCACTCTCGGTCCAAAAGGGCTTTTCCGATTGGGGCTGAGCAGAGGGGTCATGTTTGCCTTCCCTTTCAG
Seq C2 exon
ATTATGGACGGTTCCTTCGTGCAGCACAGCGTGAGGGTTCTGCAGGAACTCAACAAGCAGCGCGAGAAGGGCCAGTATTGCGACGCCACACTGGACGTGGGGGGCCTGGTGTTCAAGGCGCACTGGAGTGTCCTGGCGTGTTGCAGCCATTTCTTCCAGAGAATCTACGGGGATGGCACAGGGGGCAGCGTTGTCCTCCCAGCGGGCTTTGCTGAGATTTTTGGCCTCCTGCTGGACTTTTTCTACACTGGCCACCTCGCCCTCACCTCAGGGAACAGGGATCAGGTACTCTTGGCAGCCAAAGAGTTGAGGGTGCCTGAGGCTGTGGAGCTATGTCAGAGCTTCCAGCCCCAAACCTCAGTGGGACAGGCACAGAGTGGACTGGGTCAACCTGCCTCCCAGGACGTGAAAAGCCACCTGAAGGAGCCGACAGACTTGGATGAGGAGGAAGTTTTCAGGACTCTGAGCCTGGCCTCCGTGGATCAGGAGCCCAGAGACACTGAGCAGCCCCAGCTGGGTACACCTGCTCAGAGCACCACGGCCTTCCTCTGTGGGAAACTCACGCAGGCTTTGAAGCCTTCTCCCTCAGAGGACAAAGAGTCTGAGGACTGCAAAGAGCCCCCAAGGCCCTTCGAGGCTGGAGGTGCCCCGCTGCAGGGCGAGAGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952-Zbtb48:NM_133879:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.451
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=46.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTCTTGTGGGCGGTGGAA
R:
ATCCCTGTTCCCTGAGGTGAG
Band lengths:
354-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: