RnoINT0167017 @ rn6
Intron Retention
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169198857-169200109:-
Coord C1 exon
chr5:169200008-169200109
Coord A exon
chr5:169199529-169200007
Coord C2 exon
chr5:169198857-169199528
Length
479 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
ATGTTTGCCTTCCCTTCCAGATT
3' ss Score
11.76
Exon sequences
Seq C1 exon
GGCGTCTCCGCGCTGTGGGCCGGGCAGTAGTTAGTCTTGTGGGCGGTGGAAGTGGTCTAGCCCGGAGCAGTGAGGCCGGTGCGAGCCGGGAGGACCGGCAGG
Seq A exon
GTGAGGAGGGCGCGGGAGGGAGGCGCCTCGGGCTCTGAGGAGAGTGTGGCCGCCGCCTTCCACTTGCCGTCCGCGACGTGCAGGCGCGGCGTGGGCTTGGGTCACCTGTGCGCAGCCGCCGCCCTGCCCTTCTGGCTGTGCGTTGGGTGCGCTACAGATCAGTTGTCGTCCACGCTTTTCTGTCCCCCAAACTCTCATTTTCATTTTCTCCCACCAGCACCCTATCCCGACGGACCCAGTCCTGTCTCGCGCCATGCACTTCCTCTCCCGCTCTCTCCCCTCTGGCCAACCCATGCCGCTCCCCGCCCCCAAGAGGCTGTCACTCCACGCTGGCTGTGTGCCCCGTGTGCACCTTCTAACCTTGACCCAGGCCTTCATCCCGACATGGGTGGATGTTTAAAGTGTCCATCTCACCCTCAGTCTAAAAGGGCTTCCCCGATTGGGGCTGGCCAGAGTGTCATGTTTGCCTTCCCTTCCAG
Seq C2 exon
ATTATGGATGGTTCCTTCGTACAGCACAGCGTGAGGGTTCTGCAGGAACTCAACAAGCAGCGTGAGAAGGGCCAGTATTGCGACGCCACGCTGGACGTGGGGGGCCTGGTGTTCAAGGCGCACTGGAGTGTCCTGGCGTGTTGCAGCCGTTTCTTCCAGAGAATCTACGGGGATGGCTCAGGGGGCAGTGTTGTCCTCCCTGCAGGTTTTGCTGAGATTTTTGGCCTCCTGCTGGACTTTTTCTACACTGGCCACCTCGCCCTCACCTCAGGGAACAGGGATCAGGTGCTCTTGGCAGCCAAAGAGTTGAGGGTGCCTGAGGCTGTGGAGCTATGTCAGAGCTTCCAGCCCCAAACCTCAGCGGGACAGGCACAGAGTGGACCGGGCCAAGTTTCCTCCCAGGATGTGAAAAGCCACCTCAAGGAGCCAACAGACTTGGATGAGGAGGAAGTTTTCAGGACTCTGAGCCTGGCCTCTGTGGATCAGGAGCCCAGAGACGGTGAGCAGCCCCAGCTCAGCACACCTGCCCAGAGCAGCCCGGCCTTCCTCTGTGGGAAACTCAAGCAGGTGTTGAAGCCTTCTCCCCCAGCGGACAAAGAGTCTGAGGACAGCAAAGAGCCCCCAAGGCCTTTTGAAGCTGAAGGTGCCCCACTGCAGGGCGAGAGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595:ENSRNOT00000012745:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.471
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=46.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTCTTGTGGGCGGTGGAA
R:
ATCCCTGTTCCCTGAGGTGAG
Band lengths:
354-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]