MmuINT0177731 @ mm10
Intron Retention
Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:152026388-152027661:-
Coord C1 exon
chr4:152027543-152027661
Coord A exon
chr4:152027060-152027542
Coord C2 exon
chr4:152026388-152027059
Length
483 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
ATGTTTGCCTTCCCTTTCAGATT
3' ss Score
12.79
Exon sequences
Seq C1 exon
TCCGGCGCGGCGGCGGTGGCGTCTCCGCGCTGTGGGCCGGGCAGTAGTTAGTCTTGTGGGCGGTGGAAGTGGTCTAGGCCGGAGCAGTGAAGCCGGTGTGAGCCGGGAGGACCGGCGGG
Seq A exon
GTGAGGAGGGTGCGGGAGGGAGGTGGAGAGCCGCCTCGGGCTCTCAGGAGCGTGTGGCCGCCGCCTTCCGCTTGCCGCCCGCCCGCGATGTGCAGGCGCGGCGTGGGCTTGGGTCACCTGTGCGCAGCCGCCGCCCTGCCCTACTGGCTGTCCGTTGGGTGCTCTACAGATCAGCTGTCGTCCACGCTGGTCTAGCCCCAAACTCTCATTTTCATTTTTTCCCCACCAGCACCCTATCCCGACTGCCCCTGTCCTGTCTCCCGCCATGCACTTCCTCTCCCGCTCTCTCCCCTCCGGCCAACCCATGCCGCTCCCCGCCCCCAAGACTCCACTCTGGCTGTGTACTCTGTGTGCACTTTCTAACCTTGACCCAAGCCTGCATCCCGACATGGGTGGATGTGCAAGTGTCCATCTCACTCTCGGTCCAAAAGGGCTTTTCCGATTGGGGCTGAGCAGAGGGGTCATGTTTGCCTTCCCTTTCAG
Seq C2 exon
ATTATGGACGGTTCCTTCGTGCAGCACAGCGTGAGGGTTCTGCAGGAACTCAACAAGCAGCGCGAGAAGGGCCAGTATTGCGACGCCACACTGGACGTGGGGGGCCTGGTGTTCAAGGCGCACTGGAGTGTCCTGGCGTGTTGCAGCCATTTCTTCCAGAGAATCTACGGGGATGGCACAGGGGGCAGCGTTGTCCTCCCAGCGGGCTTTGCTGAGATTTTTGGCCTCCTGCTGGACTTTTTCTACACTGGCCACCTCGCCCTCACCTCAGGGAACAGGGATCAGGTACTCTTGGCAGCCAAAGAGTTGAGGGTGCCTGAGGCTGTGGAGCTATGTCAGAGCTTCCAGCCCCAAACCTCAGTGGGACAGGCACAGAGTGGACTGGGTCAACCTGCCTCCCAGGACGTGAAAAGCCACCTGAAGGAGCCGACAGACTTGGATGAGGAGGAAGTTTTCAGGACTCTGAGCCTGGCCTCCGTGGATCAGGAGCCCAGAGACACTGAGCAGCCCCAGCTGGGTACACCTGCTCAGAGCACCACGGCCTTCCTCTGTGGGAAACTCACGCAGGCTTTGAAGCCTTCTCCCTCAGAGGACAAAGAGTCTGAGGACTGCAAAGAGCCCCCAAGGCCCTTCGAGGCTGGAGGTGCCCCGCTGCAGGGCGAGAGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952:ENSMUST00000155389:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.447
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=46.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTCTTGTGGGCGGTGGAA
R:
ATCCCTGTTCCCTGAGGTGAG
Band lengths:
354-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types