HsaINT0184667 @ hg38
Intron Retention
Gene
ENSG00000204859 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr1:6580048-6581299:+
Coord C1 exon
chr1:6580048-6580136
Coord A exon
chr1:6580137-6580540
Coord C2 exon
chr1:6580541-6581299
Length
404 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTTCTCTCTCTTGACTCCAGGAG
3' ss Score
9.46
Exon sequences
Seq C1 exon
GGGTACGCATAGCCGGGCACTAGGTTCGTGGGCTGTGGAGGCGACGGAGCAGGGGGCCAGTGGGGCCAGCTCAGGGAGGACCTGCCTGG
Seq A exon
GTGAGGAGGGCGCGGGGTGAGGGAGGGAGGGGCTGCGGGCCGCCGTGGCTGCCTTCCGCTCGGCCGCTCGGGACCTGTGGGCGCGGCGTGGGCTTCGCTCACCTGTCCCCGGCTGCCGCCCTCCGCCGTCCGGGATCCTCTCACTGTGCCGGGCCAGTCCGTTCGCTCTCATCCCATGTCTCCTTTCCCCAAACTTGGATTTTTCTCACCAGGCCCTTCTTCACGACCCTGGCCCCCCATCCAGCATCCCCCCTGGCCAATCCAATATGGCCCCCGGCCCCCGGGAGGCTGTCAGTGTGTTCCAGCCCTCCGCGTGCACCCCTCACCCTGACCCAAGCCCTCGTGCTGATAAATATGATTATTTGAGTAGAGGCCAACTTCCCGTTTCTCTCTCTTGACTCCAG
Seq C2 exon
GAGCTTTCTCTTGCATACCCTCGCTTAGGCTGGCCGGGGTGTCACTTCTGCCTCCCTGCCCTCCAGACCATGGACGGCTCCTTCGTCCAGCACAGTGTGAGGGTTCTGCAGGAGCTCAACAAGCAGCGGGAGAAGGGCCAGTACTGCGACGCCACTCTGGACGTGGGGGGCCTGGTGTTTAAGGCACACTGGAGTGTCCTTGCCTGCTGCAGTCACTTTTTCCAGAGCCTCTACGGGGATGGCTCAGGGGGCAGTGTCGTCCTCCCTGCTGGCTTCGCTGAGATCTTTGGCCTCTTGTTGGACTTTTTCTACACTGGTCACCTCGCTCTCACCTCAGGGAACCGGGATCAGGTGCTCCTGGCAGCCAGGGAGTTGCGAGTGCCAGAGGCCGTAGAGCTGTGCCAGAGCTTCAAGCCCAAAACTTCAGTGGGACAGGCAGCAGGTGGCCAGAGTGGGCTGGGGCCCCCTGCCTCCCAGAATGTGAACAGCCACGTCAAGGAGCCGGCAGGCTTGGAAGAAGAGGAAGTTTCGAGGACTCTGGGTCTAGTCCCCAGGGATCAGGAGCCCAGAGGCAGTCATAGTCCTCAGAGGCCCCAGCTCCATTCCCCAGCTCAGAGTGAGGGCCCCTCCTCCCTCTGTGGGAAACTGAAGCAGGCCTTGAAGCCTTGTCCCCTTGAGGACAAGAAACCCGAGGACTGCAAAGTGCCCCCAAGGCCCTTAGAGGCTGAAGGTGCCCAGCTGCAGGGCGGCAGTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204859:ENST00000377674:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.458
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=45.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTAGGTTCGTGGGCTGTG
R:
AGCAGGGAGGACGACACTG
Band lengths:
342-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains