HsaINT0186192 @ hg19
Intron Retention
Gene
ENSG00000131849 | ZNF132
Description
zinc finger protein 132 [Source:HGNC Symbol;Acc:12916]
Coordinates
chr19:58944181-58948582:-
Coord C1 exon
chr19:58948414-58948582
Coord A exon
chr19:58946579-58948413
Coord C2 exon
chr19:58944181-58946578
Length
1835 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATG
5' ss Score
4.83
3' ss Seq
TGGCATTTCTCTACTTTCAGGTT
3' ss Score
10.13
Exon sequences
Seq C1 exon
CATACTTCTTGGCCCTGTGGCTCAGCTGTCCCCACATTGAAGAGCATGGTAACCTTTGAAGATGTGGCTGTATACTTCTCCCAAGAGGAGTGGGAGCTCCTTGATGCAGCCCAGAGGCACCTGTACCACAGTGTGATGCTGGAAAACCTTGAGCTTGTGACCTCACTTG
Seq A exon
GTAATGCCCTGTCTCAGCATGGTGATGACTACCTTATGCCTTGTGTCTTTTCCCCATAGAAAGCTCTGTTCATCCCAAAGCCAGATCATGGGTACTGCTTCCTTCTCGGGTTTCCTGTTGTAGGTGCTGGGGTGCTGAGGTTCTGCTGTGTGTACTTCCCCTGTCTCTCTCTGAGCAGCCTCATGAGCTTTCCTAATAGCTGTTGCCCAGGAGCCTTGTGGAGGCAAAGGTTGGGGATCAGACACCTCCAGTCTGCCTAACAGATCCCACTGAGATTCACCAATCCCTGGTCGGGTTACCCAGTATGAGGTCATGCCCAGATTCTGTCTCTTTCCCAATGAGATTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCCCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTTACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCTGCCACCACACCCAGCTAATTTTTTTTGTATTTTCAGTAGAGAGGGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCCCCAGTGAGATATTTTTTAAAAACAGCTTTATTAAGATAAACCATACAATTCACCTTTTAAAGTACACAGTCTAGTGATTTCTATATGTTTTCACATGGTATAATCATTGCTATAATGTAATTTTAGCATGTTTTCATCACCTAAAGAGAAACTGTAGGTCCTATTAGCAGTCCCATTAGCTGTCACTCCCCATGTTCCCTTATCCCTTTCCCCCCGGTCCTAGGCAACCACTAATCTACTTTCTGACTATATAGATTTACGTTTCCTAGACATTTTATAGAATACTATGTATTTTTCTGTGACTGGCTTTCTCTTAGCATGTTTTTGAAGTTCATCAATGTTGTAGCATGTATCAATATTTCATTCTTTTTTATAGCCAAATATTCCAGTGTATAGAAAGACTACAGTTTGTTTATCCATTTACCAGTGGATGAGCATTTGGCTTGTTTCCATTTTTTAGGTGTTAGAAAAAAATGCTGCTATAGAAGCTGGGCAAGGTGCCTATAATCCGTCTACTCAGGAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGTTTGAGACCAACCTGGGCAACATAGCAAGACCCCATCTCAAATTTTAAAAAAATTCTGCTATGAACAGTCCTGTACACATTTTTGTGTGGATGTTTTTAGTTCTCTTGTGTAGCTCTGTAGAAGCAGACTTGCCAAACTGTTTTCCAAATTGGCTGCACCATTTTACATCCCTGTCTGCAGTGTATAAGTGCTCCAGTTTTTCTACTTCATTTGTTGTCATTTATTTTTTTTTATTATAGCTATGCTAGTGGATGTGAAGTGGTATCTCATTATGGTTTTGGTTTTCATACTCCTCATGTTTAAGGATGCTGAACTTCTTTTCATATGCTTATTGGCCATTTGTGTATATATCTTCTTTTAGAGAAATGTCTATTTAAGTCCTTTGACCCATTTCTGTGTCCTTACCCCTGGTGAGGTCTCCCTTATTCTGTTGCTTGGCTGGTCCCTATCCTGCCAATAGTAATGGGCCCTTCTTCACCCTGATGATGGCCCTGTTGGCCTGTCAGCAATCCCTGGGACCTCTTCTTGGGTGTGAATTCCTGGGTAACATTTCTAATGAAGTCAACCATTCCCACCAAGTGGAATTCTTAGTTAACTGGCATTTCTCTACTTTCAG
Seq C2 exon
GTTCTTGGCATGGAGTAGAGGGTGAGGGGGCCCATCCCAAGCAGAATGTTTCTGTAGAAGTGTTACAGGTCAGGATCCCTAATGCAGATCCTTCCACCAAGAAAGCTAACTCCTGTGACATGTGTGGGCCATTCTTGAAAGACATTTTGCACCTGGCTGAGCATCAGGGAACACAGTCTGAGGAGAAACCCTACACATGTGGAGCATGTGGGAGAGACTTTTGGTTGAATGCAAACCTTCACCAGCACCAGAAGGAGCACAGTGGAGGGAAGCCCTTTAGATGGTACAAGGACAGGGACGCACTTATGAAGAGCTCTAAAGTCCACCTGTCAGAGAACCCCTTCACTTGCAGGGAAGGTGGGAAGGTCATCCTGGGCAGCTGTGACCTCCTCCAGCTTCAAGCTGTTGACAGTGGGCAGAAGCCATATTCCAATCTTGGGCAGCTTCCAGAAGTCTGTACCACACAGAAACTCTTCGAGTGCAGCAACTGTGGAAAAGCCTTCCTGAAGAGCTCCACTCTCCCCAACCATCTGAGAACTCACTCTGAAGAGATACCATTTACATGCCCAACAGGTGGAAATTTCTTAGAGGAGAAATCAATCCTTGGTAATAAAAAGTTTCACACTGGGGAAATACCCCATGTGTGTAAGGAGTGTGGGAAGGCCTTTAGTCACTCATCTAAGCTGAGGAAGCACCAGAAATTTCACACTGAAGTAAAATATTATGAGTGCATTGCATGTGGGAAAACCTTCAACCACAAACTCACATTTGTTCATCATCAGAGAATTCACTCAGGAGAAAGACCTTATGAGTGTGATGAATGTGGGAAAGCCTTCAGTAACAGATCACACCTCATTCGGCATGAGAAAGTTCACACTGGAGAAAGGCCTTTTGAGTGCCTGAAATGTGGAAGAGCCTTCAGCCAAAGCTCCAATTTCCTTCGGCATCAGAAAGTTCACACACAGGTAAGACCTTATGAGTGCAGTCAATGTGGTAAATCCTTCAGCCGAAGCTCTGCTCTCATTCAGCACTGGAGAGTTCACACTGGAGAAAGACCGTATGAATGCAGTGAATGTGGAAGAGCTTTTAACAATAACTCCAACCTTGCTCAGCACCAGAAAGTTCACACCGGAGAACGGCCTTTTGAGTGCAGTGAATGTGGAAGAGACTTCAGCCAAAGCTCCCATCTCCTTCGACATCAGAAAGTTCACACTGGAGAACGGCCTTTTGAATGCTGTGATTGTGGTAAAGCCTTCAGTAATAGCTCCACCCTCATCCAGCACCAGAAAGTACATACTGGGCAAAGGCCTTATGAGTGCAGCGAATGTAGGAAATCCTTCAGCCGCAGCTCCAGCCTGATTCAGCACTGGAGAATTCACACTGGAGAAAAGCCTTACGAGTGTAGTGAGTGTGGGAAAGCCTTTGCTCACAGCTCCACTCTCATTGAACACTGGAGAGTTCACACAAAAGAAAGGCCTTATGAGTGCAATGAATGTGGGAAATTCTTTAGCCAAAACTCCATTCTCATTAAGCATCAGAAAGTTCATACTGGAGAAAAGCCTTATAAATGCAGTGAATGTGGGAAATTCTTTAGCCGAAAATCCAGCCTTATTTGTCACTGGAGAGTTCACACTGGAGAAAGGCCTTACGAATGCAGTGAATGTGGGAGAGCCTTTAGCAGTAACTCCCACCTGGTTCGTCATCAGAGAGTTCACACACAAGAAAGGCCCTATGAGTGCATCCAGTGTGGAAAAGCCTTTAGTGAAAGATCTACACTTGTTCGGCACCAGAAAGTTCACACCAGAGAAAGGACTTATGAGTGTAGCCAGTGTGGGAAACTCTTCAGCCATCTTTGTAACCTTGCACAGCATAAAAAGATTCATACCTGAGTGGAGCCTTATGGAAGTGGTCTTTGTGAGAAAATCTTCAGCCAAGTCAAACTTCATGCAGCAGAATCCCCATACCAGAAAAATTACCTACATGTACTGCTAATGTGGAAAAGCCTTCAGAAGCTACTCTGTTTCTGACCAGCCCAGGAACCTTTGCAGGGCCATCTCACCCATGCAGCATAAGGCAGAAGCCATAGTCACTTTCCATCTTGCCTGGATCCAAAAATTTGCAGCAGTCCTGTCCTCATGCATGGGGAAAACAGTACCCTGAGCCTTCCTTCCTGTGTTCTCTAGGGATTCAGGACTGTGCTCAGCTGAACCGATGCTGGTTGAGGGGCCTTGAGGGAAATCTAATTTGAGCTCAGGAAGATGCACATTCCTTGTGGATGTGGTCAAGTCTGTGTTTAACCCCTAAGATGTGTCCATTGAGGCCACAAATCACCCTCCACTGGAATCACCTACCTTGCCTGCACTAACTGGTGATAATAAAGACCTTATTGATCAGGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131849-ZNF132:NM_003433:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=71.9)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF0013017=C1_1=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.0),PF0013017=C1_1=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACATTGAAGAGCATGGT
R:
TCTCTCCCACATGCTCCACAT
Band lengths:
357-2192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)