HsaINT0186381 @ hg38

Intron Retention

Gene

ENSG00000157429 | ZNF19

Description

zinc finger protein 19 [Source:HGNC Symbol;Acc:HGNC:12981]

Coordinates

chr16:71473583-71478341:-

Coord C1 exon

chr16:71478228-71478341

Coord A exon

chr16:71476273-71478227

Coord C2 exon

chr16:71473583-71476272

Length

1955 bp

Sequences

Splice sites

5' ss Seq

AAGGTAGGT

5' ss Score

10.29

3' ss Seq

TTTTCTATCTCTTATGTCAGATG

3' ss Score

8.47

Exon sequences

Seq C1 exon

GGTACCCAGTTCCCAAACCTGCACTGATCTCACTTTTGGAGAGAGGGGACATGGCTTGGGGCCTGGAAGCACAGGATGATCCCCCAGCAGAGAGGACCAAAAACGTCTGTAAAG

Seq A exon

GTAGGTGAGGCAGATTTAGAACCAACAATTGTAGCGTTTTATGGAGCACTGTATTTTAAAATGAATCATGCTGGGCAGGATTTAAATAAAATAGATGATTTCACCTAATAGGTAAAATATGAAACGTTTCTCACCAATCTTAACTCTTACCAACATGTAATCACTCAGTACGTCTCATCTGCAATCCTTGAATCCATTGTTCCTTTCTGAGTTTCAACATTGCCTACCTTAGTTGTCCTCCTTGGTTGGGATGGATTTATTCAGGAGCAGTTTTTGAGCAACTTGCCATGTGCTGAACGTTGTTTAAGAAGTTCTGGCAGGTACAAGTTATGGAGACAGATGTAAAAAGCGAAAAAGAAAAGTATTAAGTGCTGTTGGGAGTGGGACGGAGAATGTGAAGGTAAAATGGGCCAGATCTTCCCAAAAGTTGGCCATAAATGGGGAGAGCTGAGTCAGATAACACTAGGAAGTCATGGCATGGGAGGAGCTTTTTGAATTCATAGGAATTCAGAGCTGAGCACAGGGCGTGAGGTGCCTTTAGAATAGGCAAGTGGATGGCTAGAGCAGGCCATTGAGAAGGTGGGTGGAGAGTCTGAGATAAAAGGCAGGTCTGAAACAGTACTCTAACACAGCTGGGTTGAAACGATCCCCAGGAAGAAAAAATGAAGGCTGAATCTTAACCATTAAGGGATATTTAATTTCAGTGAGAGAAGGAAGAGAAAGTAGACAGTCAAATAGATGGGGGCCACCAAGAGCAAACAGTGAAATTGAAGGCAGAGGCAGGAGTTTCAGTGCAGGTGGTTTGCAGAGAGCAAATACGTGGAAAATAATGAAGCTAGCACAGCACTTCAGCCTCTTATTCTAAGAATCTGAAAAAGAATCATCAAGACAATTGAGAACCTGTTGGTTTGTTCTCACACGCTTCCTCTGTCTGGTGATTATTCTTTTTCAGACTCTTGGTTACCTTGTTTACTTCAATCTCAGATTACTCTCCTCTGAACATTCTCCTTCGGAGTTCCCTTACTCCTTTAACTCACACTCATAGGATGAACTTGATTAACCATCACATGAGTCCCAGGTAACCCACATTAATGTTAAAACCAAGCCCATCATTTCATATAAAATGGATTGACTTTAACTCATTTAAAATGTCATCCAATCTTTTGGAACACAAATGCCATTTTATGGGCTGTTTGTCTCCTTTTTGCTGATAGGAGAAAGAATACTCTCAGTCTGGGTGTGTCTAAGTAAACTGTTCATCCCTTTTCAAATAGAGAGTCTAGGACAGTAGTTTCTCTGCATGTTTGAGGTTCAGCAGTTTTAGGGCGTTTCCTCATCGTCTATAGTCCATGTGTGGTTCTGCAGTTAAGAACCTCTGAACTAGGTAATCTTACAACATATTGGGAATAATACTCTCTAAGCACTTCTGTGATTTTCTTTCTCTCTGTCTTGCCACAACCCAGTGTCTGTAATGTTCAGTGTCTTAAGTCTTTTGGGACATCTGCAGGGTATGAGTTTTTAAAAAGAACAACAATTCATCCTTTGCCTTTGCTTTCTGATACTGTTCTGTTTCACTTTCTGATTCTAAGTCTTGCCAGCCCCGATGTCACTACTTGTTCTTAAGACCTGTGCCTTCTTTGGCATTTTGTAGGCTGTAAGTAGCATCAATTCAAAAGATACTAGCTCATGCCAGGGATGACCAGACATCATTCAAATATTAGAGTAGAAAAGCTTAGGAAGCAGTCTCGTGTGTTGTGTCCACTGATACCCTGTTCCACCTCAATGTTCTCTGCCTGTGTGATATTTGGCACTTTCACTTTAACAGCCTTTTCTTCCCAGCATGCTGATGTGAAAGTTGAAATGATCTCTTTTAAAGCCTTATCATTTTCAATGCTCTATTATTTCTAGTATAGTTCTCAGGTGGCATTATTTGTGTTTTCTATCTCTTATGTCAG

Seq C2 exon

ATGTTGAGACCAACATTGACAGTGAGTCCACATTAATCCAGGGAATTTCTGAAGAAAGAGATGGGATGATGTCACATGGTCAGCTGAAGAGTGTCCCTCAGAGAACTGACTTCCCAGAAACACGTAATGTGGAAAAGCACCAGGACATCCCCACAGTGAAAAATATCCAAGGAAAGGTTCCAAGAATCCCCTGTGCAAGGAAACCTTTCATATGTGAGGAGTGTGGGAAATCCTTCAGCTACTTTTCTTACTATGCTAGACACCAGAGAATCCACACTGGGGAGAAACCTTTTGAGTGTAGTGAGTGTGGAAAAGCCTTTAATGGTAATTCTTCGTTAATTCGGCACCAGAGGATTCACACTGGAGAGAGACCCTATCAGTGTGAGGAGTGTGGGCGAGCCTTTAATGATAATGCAAATCTGATCAGGCATCAGAGAATCCACAGTGGGGACAGACCCTATTACTGTACAGAGTGTGGGAATAGTTTCACGAGTAGTTCCGAGTTTGTTATACATCAGAGAATCCACACTGGGGAGAAACCCTATGAGTGTAATGAGTGTGGCAAAGCTTTTGTTGGTAATTCACCCCTACTTCGGCATCAGAAAATCCACACTGGAGAGAAACCCTATGAGTGTAATGAGTGTGGCAAAAGCTTTGGAAGGACTTCCCATCTAAGCCAACATCAGCGTATTCACACAGGGGAAAAGCCTTATTCTTGTAAAGTATGTGGACAAGCCTTCAATTTTCATACAAAACTAACTCGGCACCAGAGAATTCACAGTGAGGAGAAACCCTTTGACTGTGTAGATTGTGGAAAAGCCTTCAGTGCTCAGGAACAATTAAAAAGGCATCTGAGAATTCATACTCAGGAGTCTTCCTATGTATGTGATGAGTGTGGAAAAGCCTTGACTAGCAAAAGAAATCTTCATCAGCATCAAAGAATCCATACTGGAGAGAAACCCTATGAGTGTAGCAAGTATGAGAAGGCCTTTGGGACTTCTTCCCAGCTAGGTCACCTTGAGCATGTCTACTCTGGAGAGAAGCCTGTGCTGGACATTTGTCGTTTTGGCCTCCCAGAATTTTTTACCCCCTTTTACTGGTAATAGTACACTCCAGTGAAATGTACTGAGTGGATTCCGTCTTCTACTCAGGAATGGAATGTGTGACACAGGCCTGACTCAGCCTCTGATCCATCCCTCAAGCCACAGTTAATGATTCAGATGTCAGTAGATGACCAAAGATGGTTCAATTAGAGTCCCAGGATTGCAAGAGCTAATAGGAACAAATACTCTCCCCCCGCCCACCCCCATTGGTTTTAATGCTGAGAAGAAGAACTAGACTCTTACAGAGGTGAGAATGAAGTCCACACAGCAAAAATGCATCTGAGAATTGGAGAGCAGTAAAAGACTGAAGATAATGTTTGAACAGCCACATACACCATGCCTGAAGCTAAAAATATATACGGGTTTTTGAATTGCAGCAGCCAATAAATTCCATTTTTGTTTGGTTGGTTTTGGCTTTGGCACACCTGAGTTAGGTTTTCTTGCCTTGGAACAGAATTTTGACTTAAACAGTGTTGTCATTGTAGCAGTTGTTTGAAGTTTTCAGGGATAACATACCTGATGGAGAAATGTTTTGTGTGTATGATATATGGGAAAGTCTTTAGTTATAGTCATGGCAGCTCCTCAACCCCATGATTGTGATGAGATTGGGAAGCCCACTGTAACACTGGAGAGCCCAGGTTATATCAGACACCACTAGTAGATAGAAGTTCTAACAACTTGAGCTCTGTAACAAAAATCTCATTGTACTACAAAATTATGTCTGCACCAGTGAATCCATTCTCAAGAAAAGTCTTAACTAGGAAACTAAAAGCTTTCACTCTTAAAGCTTTCATTTTCTGTTTATTCAGTTTTTTATTTGGAATGGATGCTACTCTAGGCCTTAAACTGAGAAATGCCAGGCTATTGTAGCTATTATATCTTGGTATTTGCCATTTTAATTCCTAGGACAGCACGCCCGCTTTGCCCTTGACCTGGCTAGGGAGCCAAGGAAATGCCATGGTTCTTGGTCATAAGACACACTGCAGAGATCTCTCAGTAGGAAAACAGGGCTGGCCCTTTTCTTTGGTGATGAACACAAACTGCACCCTTTTTTTCTCCCACGTGTCCTTCCGCTGCCAGCCAGTGTTGGAATCTCCCTACCCAATTCCAGACTTAATTGCTTACTGCGTCTAGCACCTGGGTGGCTTCACCACCTCTTCCTTACTTGTCAGCAGATGAATGAGCAGTTGTATCATGTGCTTGGGTTGACCAATGAATGATAGACTTGGGGAATTGAGTAAACACCTTTTAATTGAAGTATAACACAAACATAAAAATGCATGAGTCAGCCAGGCGCGGTGGCTCACACTTGTAATCCCAGTACTTTGGGAGGCCGAGGTGGGCGATTCATCAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAGAATTAGCTGGGCGTGGTGGTGCATGCCTGTAGTCCCAGCTGCTCAGGAAGCTGGGGCAGGCGAATTGCTTGAACCCGGGAGGCGGAGGTTGTAGTGAGCCGAGATTACACCACTGCACTCCAGCCTGGTGACAGAGTGAGATTCCTCAATAAAATAAAATAAAACCATGAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000157429:ENST00000288177:5

Average complexity

IR

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.487 A=NA C2=0.171

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1)

Main Inclusion Isoform:

ENSP00000462021