BtaINT0165005 @ bosTau6

Intron Retention

Gene

ENSBTAG00000032018 | ZNF19

Description

Bos taurus zinc finger protein 19 (ZNF19), mRNA. [Source:RefSeq mRNA;Acc:NM_001083460]

Coordinates

chr18:39731313-39736198:+

Coord C1 exon

chr18:39731313-39731426

Coord A exon

chr18:39731427-39732541

Coord C2 exon

chr18:39732542-39736198

Length

1115 bp

Sequences

Splice sites

5' ss Seq

AAAGTAAGT

5' ss Score

9.72

3' ss Seq

TTTTCTGTTTGTTATATCAGATT

3' ss Score

7.51

Exon sequences

Seq C1 exon

GATACCCAGTTCCCAAACCTGCGTTAATCTCACTTCTAGAGAGAGGGGATTTGCCTGTGGGCCTGGAGACACAGGATAATCCTCCTGCACAGGGTACCAGAGACATCTATAAAA

Seq A exon

GTAAGTGAGGCAGTGACTATAGAGCTTTACAGAGCAGTATGTTTTAAATGAACCATGCTGGGAAGGATTTAAATAGATGATTTCTTAAAATAGCCAAATATGAAACCATTTCCACCAACCATAACTCTTTTCCACATATTTCCAATTAATGCATCTCATAATTCTCAAATCTATTTCCTTGTCAACTGTTCTCTACCTGTAAATATTTGACACTTTGATTTTATTAGCCTTATCTGAACAGCAGGCTGATGTTGGGAGTTTAGTAATCTCTAAAATCTCTGTTGTGAAAGTGAAAGTGTTAGTCACTCAGTTATGTCCAACTCTTTGTAACCCAATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGAATTCTCCAGGCAAGAGTACTAGAGTAGGTAGCCATTTCCTTTTCCAGGGGATCTTCCCAACCCAAGGACTGAACCCAGGTTTCGTGCATTGCAGGCAAATTCGTTACTGACTGAGCCACCAAGGATAGTTACATATGGGGCATATGTTTTCAGATCCCCAGTGGATGCCTGAAACTGCAGGTAGTATCAAACCCTATGTAGTTATCCCTGGGTATCCACAGGGGATTGACTCCAGGACCTTTGTAACTGTGGGGTCTGCTTTCTTGGGTACAGAAAATCAACTATGTATCTATCATGTCTTTTTTTATATATGCATACCTGTGATAAATTAGACACAGTAAGAGAATATCCAGGTTGCCAGTGTCACTCCTCTTGCATGTTGGAGCCATTATGAAGTAAAATAAGGGTTACTTGAATACAAGTACTGAAATCCTGCAAAGGTCTATCTGATAACTGAATCAGCTACTTATTAATAGGCAGGTAGCATATACAAAAGGATGAGTTACATCTGGTTGGAGTAGGTTGGTGCTAGGTTTCATGCTATTCAGAACAGTGCACAATTTAAAACTTAAGGATTATTTATTTCTGGAACTTTACATTTAATATTTTTGGATTGTGGTTGACAGGGAAACTGAAACTATGGAAAGAGGGACTGCAGATAAGGGGAACCACTATAATTTTCAATATTCTTTTGTTTTTGCTATAATTCTTAGGTGGCATTTTTGTTTTCTGTTTGTTATATCAG

Seq C2 exon

ATTCCAGGACCCACATGGACAGTGAGTTAACACCAACATGGGGAATTTCTGAAGAAAGAGACTTGATGATGTCACATGGGCCACAGAAGAATGTTCTTAACAAAAGCAGCTTCCTAGAAACATGTGAACTGGAGCAACACCAGGAAATCCCCACAGTGAAAAATATTAGAGGAAAGGTTCTAAGAATCCACTACGATAGGAAGCCCTTCAGATGTGAGGAGTGTGGGAAATGCTTCAGCTATTTTTCTTACTATGTTAGACATCAGAGAATCCACACTGGGGAGAAACCCTTTGAGTGTAATGAGTGTGGAAAAGCCTTTAATGGCAATTCTTCATTAATTCGACATCAGAGAATCCACACCGGTGAGAAACCCTATCAGTGTGAAGAGTGTGGGAGAGCCTTTAATGATAATGCAAATCTGATCAGGCATCAGAGAATCCACAGTGGGGACAGACCTTATCTCTGTAGGGAGTGTGGAAATGGTTTCACCAGTAGTTCTGAGTTTATTATACACCAGAGAATTCACACTGGAGAGAAACCTTATGAATGTAATGAGTGTGGAAAAGCTTTTGTTGGTAATTCACCACTTCTGCGACATCAGAAAATCCACACTGGAGAGAAACCATATGAGTGTAATGAGTGTGGAAAAAGCTTTGGAAGGACTTCTCATCTTAGTCAGCATCAGCGTATTCACACAGGGGAAAAGCCTTACTCTTGTACAATATGTGGGCAAGCCTTCAATTTCCATACAAAATTAACTCGGCACCAGCGAGTCCACAGTGAGGTGAAACCTTTTGATTGTATATGTTGTGGAAAAGTGTTTAGTACTCAGGCTCAGTTGAAAAGGCATCTAAGAATCCATATTCAGGAGACCTCCTGTGATGAGTGTGGAAAAGTCTTCACTAGCAAAAGAAATCTGCTTCAGCATCAAAGAGTCCATACTAGAAAGAAACCCCGTGAATACGTCAAGTATGAAAAAACCTTTAGGACATCTTCCCAGCTAGATTGTGCTCACCCTGGAGAGAAGCCTGTGCTGGATGTTGGTTGTTTTGGGCTCCCAGAATTTTTTACCCCCTTTTACTGGTAACAGTACACTATATTTCCTTTGCCTTCCATCTTCCACTCGGGTAGAATGTGTGACACAGGCCCAGCTTAGCTGCAGATTATTTCCCTCAAACTATAGCTGTTGGTTCACATGTCAGTAGATGACCCAGGATAGTCCAGTTAGAATCCCAGACTGAGTTAATAACCCTCCTAATGTTGAGCGTGGCCCTGGCCACAGCAACCAGACAGCAGACTGTGGCCCTGTAATCCTTTCACCTTCCAGTTGCAAACTTTTGGCATTTGTACTTTTTAAGAGTCAAAGATACGTGAACAATGCGGCCTCCTAATGGATGGTTTCACCGGCTTCCTGGTGTTTGGAGAACCATGTGCACCCATGTGGACTTTGGAAAGCCTGCCAGTTATGAATTCCATGGTATTGAATAATCCTTGAAACTCCCATTTCTTCATTGAGCAAGGATTTCCTTACACCCTTAGCATTTGGTGTCTGTTCTTTGCAGCACAGGGAGGAGAGGCTGGAAAAATGAGCGGTTTGGGGGAGTGGTTGATTAATGTGGCCGGGGGTAGGCTTGAAACCTGAGCTCCCACCTCCCAGGAACAAGAGAGGTCTGTGGGCCTTGCAAGGGCACAAGACCTGTTCTGAGCCAGTCTCTTGAGATGCAAGAACCTGATGTTCAAGGCTGGAGCCTGGAGTTTACCACCATCATCATCCTTGCTCTTCAGCAAATGGAAGAACTTGCTGTGGCTGGATAGCAAGAGCATTTGACAGGTAGCTGTAGCCACCGACTCTTAAGTAAATCTCTTTTTACCTTGTGCTTCAGATTCTGTGCTGTACAATGGGATCTGCTACTTTCACCAAGCCAGAATCTGTCCACATGTCCAAGTACAGCACCTCAGCTTTCCTTAAGGAGCTACATCTCACGTGCTTCCAGTCCAGACAGTATCAGAGGGCTGACCCCACACTCCACCCATCTGGAAGATGCTTATATGATGCATGTCTAGCCAGTTCCATTTTCTGTCCTCTGATTGCTATGAGGGTGAGAATATTATCCAAGCCAGGCCAAAGGCATTCCAAGTCATGAGTTTTCATGGAACCCTAGTGAAGGAGAAACCATTCCCAGTAGAATGGACTTTGAGCTTGTGTCATCCTGGAGGTGCTGGGTGAGAGACTGCCTGAGTGGAGTCACTGTAAGGCACTCAGCAGGACTGACAGTCAGAGAGGGGCCAGGTCACACACTGTGAGCCCTTGGATCTGACACTTCTGAACCCACTCTTCAACTTGTCTCTTGTAAAGATTGCTTTCTATCATCTATAATATAATTATTTCACTTGAGTGTGTCTAGTCCCTTGTAATCAAAAAAGCCCTGACACATCAGGATCATTGATTGTTGAGGCTTCCTCTGGCATGGTGCCTCTGATGGGTGGGGCATGTTTAGGGGAGGTGGAGACACTAGGAGCAGTCAGGTCTAAGGGGAGCTGCCAGACAGCTCTCCCTAATTTCTTGATGTCCCAGAACACTGAGAGGAGAACTAGCAGGGAGAAAGGGCCAGAGGATGGTCAGTTGGTCTGTTTGTATTTTCCATATTTTAGGGTTTATTTTGTTTGTGTCTTTCACCTGTTGAAGTCTTTCAGCACATCTGCCAGAAACTCATGACAGCCTATTTACTTATTGGCTTCTTATACTGTATTTCATGAAAATCTATCAACTTTTTTTTTTACCTCTACCCTGAAACAACTGGTGATTCTTTAAGGAAAAACATTTCCAGATTTCCAACAAAGTCAGTCATGACTGTCGCCAGGCCACTTTTATCAGCCTCATTGCCTTTTGTTTTTAAAAGTCCCTGTCTCTCCCTCCAGAATCTTTTTGTTAAAATAGGAAGGTAGCTAGATATGGCAACCTACTCTACTATTTTGCCTGTGTAATTCCATGGACAGAGGAGCCTGTGTCCATGGGGTCACAAAGAGGCGAACATGACTGGGCAGCTAAACAACAAAAAAAGCTAGATGTGAGCAGAGAAAGGGGAGCATGGGCCAGATGGCAGGAAGCTATGCATCTTGTGCAGAGGAGAGGGGGATCCTTGGAACCTCCATACTGGAAGCCATACATTTGGAGATAAGTATCCTGGAGGCAGAACAAAGAAATGTGGGGAAATGCAGGAATATCTGGTGTCTGAAAGTAACCTTTTGCTCATTATGCTTTCATTACAATAAAATAAGCCTTGCAGATAAGTGTCCATCCTGCACTGATGCCATGACATTTCTGATCAATGCTAAATAAGGACAAAAGTCCTTCTTTCCTCCAGGAAGATGGTGCTGCGATAAAAATCAGATAACTTGACCCCCAAACCCAGTGAATATTATGTTCCACATACCTGGCTTGCCAAAAAAACTCAGGGCAGCTATTCACCTGAGCCTGTCTGCTCTTCCCACTGGGAGGGTACTTTAACTTAAATAAATCCTTGATTTCTCTGTCTTATCTCTGAATTTTTCTGGGATAAAACAAGAACCTTTCACCAAGAACACTTTCAGGGTTACCTCAATCTGTCTTCCGAATAGCAATTCTTAGGACCCCAAATAAATTATTTTGTTTGTTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000032018:ENSBTAT00000021082:3

Average complexity

IR

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.385 A=NA C2=0.047

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.9),PF0172213=BolA=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.2),PF0009621=zf-C2H2=WD(100=6.3)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSBTAP00000021082