HsaINT0186381 @ hg19
Intron Retention
Gene
ENSG00000157429 | ZNF19
Description
zinc finger protein 19 [Source:HGNC Symbol;Acc:12981]
Coordinates
chr16:71507976-71512244:-
Coord C1 exon
chr16:71512131-71512244
Coord A exon
chr16:71510176-71512130
Coord C2 exon
chr16:71507976-71510175
Length
1955 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTTTCTATCTCTTATGTCAGATG
3' ss Score
8.47
Exon sequences
Seq C1 exon
GGTACCCAGTTCCCAAACCTGCACTGATCTCACTTTTGGAGAGAGGGGACATGGCTTGGGGCCTGGAAGCACAGGATGATCCCCCAGCAGAGAGGACCAAAAACGTCTGTAAAG
Seq A exon
GTAGGTGAGGCAGATTTAGAACCAACAATTGTAGCGTTTTATGGAGCACTGTATTTTAAAATGAATCATGCTGGGCAGGATTTAAATAAAATAGATGATTTCACCTAATAGGTAAAATATGAAACGTTTCTCACCAATCTTAACTCTTACCAACATGTAATCACTCAGTACGTCTCATCTGCAATCCTTGAATCCATTGTTCCTTTCTGAGTTTCAACATTGCCTACCTTAGTTGTCCTCCTTGGTTGGGATGGATTTATTCAGGAGCAGTTTTTGAGCAACTTGCCATGTGCTGAACGTTGTTTAAGAAGTTCTGGCAGGTACAAGTTATGGAGACAGATGTAAAAAGCGAAAAAGAAAAGTATTAAGTGCTGTTGGGAGTGGGACGGAGAATGTGAAGGTAAAATGGGCCAGATCTTCCCAAAAGTTGGCCATAAATGGGGAGAGCTGAGTCAGATAACACTAGGAAGTCATGGCATGGGAGGAGCTTTTTGAATTCATAGGAATTCAGAGCTGAGCACAGGGCGTGAGGTGCCTTTAGAATAGGCAAGTGGATGGCTAGAGCAGGCCATTGAGAAGGTGGGTGGAGAGTCTGAGATAAAAGGCAGGTCTGAAACAGTACTCTAACACAGCTGGGTTGAAACGATCCCCAGGAAGAAAAAATGAAGGCTGAATCTTAACCATTAAGGGATATTTAATTTCAGTGAGAGAAGGAAGAGAAAGTAGACAGTCAAATAGATGGGGGCCACCAAGAGCAAACAGTGAAATTGAAGGCAGAGGCAGGAGTTTCAGTGCAGGTGGTTTGCAGAGAGCAAATACGTGGAAAATAATGAAGCTAGCACAGCACTTCAGCCTCTTATTCTAAGAATCTGAAAAAGAATCATCAAGACAATTGAGAACCTGTTGGTTTGTTCTCACACGCTTCCTCTGTCTGGTGATTATTCTTTTTCAGACTCTTGGTTACCTTGTTTACTTCAATCTCAGATTACTCTCCTCTGAACATTCTCCTTCGGAGTTCCCTTACTCCTTTAACTCACACTCATAGGATGAACTTGATTAACCATCACATGAGTCCCAGGTAACCCACATTAATGTTAAAACCAAGCCCATCATTTCATATAAAATGGATTGACTTTAACTCATTTAAAATGTCATCCAATCTTTTGGAACACAAATGCCATTTTATGGGCTGTTTGTCTCCTTTTTGCTGATAGGAGAAAGAATACTCTCAGTCTGGGTGTGTCTAAGTAAACTGTTCATCCCTTTTCAAATAGAGAGTCTAGGACAGTAGTTTCTCTGCATGTTTGAGGTTCAGCAGTTTTAGGGCGTTTCCTCATCGTCTATAGTCCATGTGTGGTTCTGCAGTTAAGAACCTCTGAACTAGGTAATCTTACAACATATTGGGAATAATACTCTCTAAGCACTTCTGTGATTTTCTTTCTCTCTGTCTTGCCACAACCCAGTGTCTGTAATGTTCAGTGTCTTAAGTCTTTTGGGACATCTGCAGGGTATGAGTTTTTAAAAAGAACAACAATTCATCCTTTGCCTTTGCTTTCTGATACTGTTCTGTTTCACTTTCTGATTCTAAGTCTTGCCAGCCCCGATGTCACTACTTGTTCTTAAGACCTGTGCCTTCTTTGGCATTTTGTAGGCTGTAAGTAGCATCAATTCAAAAGATACTAGCTCATGCCAGGGATGACCAGACATCATTCAAATATTAGAGTAGAAAAGCTTAGGAAGCAGTCTCGTGTGTTGTGTCCACTGATACCCTGTTCCACCTCAATGTTCTCTGCCTGTGTGATATTTGGCACTTTCACTTTAACAGCCTTTTCTTCCCAGCATGCTGATGTGAAAGTTGAAATGATCTCTTTTAAAGCCTTATCATTTTCAATGCTCTATTATTTCTAGTATAGTTCTCAGGTGGCATTATTTGTGTTTTCTATCTCTTATGTCAG
Seq C2 exon
ATGTTGAGACCAACATTGACAGTGAGTCCACATTAATCCAGGGAATTTCTGAAGAAAGAGATGGGATGATGTCACATGGTCAGCTGAAGAGTGTCCCTCAGAGAACTGACTTCCCAGAAACACGTAATGTGGAAAAGCACCAGGACATCCCCACAGTGAAAAATATCCAAGGAAAGGTTCCAAGAATCCCCTGTGCAAGGAAACCTTTCATATGTGAGGAGTGTGGGAAATCCTTCAGCTACTTTTCTTACTATGCTAGACACCAGAGAATCCACACTGGGGAGAAACCTTTTGAGTGTAGTGAGTGTGGAAAAGCCTTTAATGGTAATTCTTCGTTAATTCGGCACCAGAGGATTCACACTGGAGAGAGACCCTATCAGTGTGAGGAGTGTGGGCGAGCCTTTAATGATAATGCAAATCTGATCAGGCATCAGAGAATCCACAGTGGGGACAGACCCTATTACTGTACAGAGTGTGGGAATAGTTTCACGAGTAGTTCCGAGTTTGTTATACATCAGAGAATCCACACTGGGGAGAAACCCTATGAGTGTAATGAGTGTGGCAAAGCTTTTGTTGGTAATTCACCCCTACTTCGGCATCAGAAAATCCACACTGGAGAGAAACCCTATGAGTGTAATGAGTGTGGCAAAAGCTTTGGAAGGACTTCCCATCTAAGCCAACATCAGCGTATTCACACAGGGGAAAAGCCTTATTCTTGTAAAGTATGTGGACAAGCCTTCAATTTTCATACAAAACTAACTCGGCACCAGAGAATTCACAGTGAGGAGAAACCCTTTGACTGTGTAGATTGTGGAAAAGCCTTCAGTGCTCAGGAACAATTAAAAAGGCATCTGAGAATTCATACTCAGGAGTCTTCCTATGTATGTGATGAGTGTGGAAAAGCCTTGACTAGCAAAAGAAATCTTCATCAGCATCAAAGAATCCATACTGGAGAGAAACCCTATGAGTGTAGCAAGTATGAGAAGGCCTTTGGGACTTCTTCCCAGCTAGGTCACCTTGAGCATGTCTACTCTGGAGAGAAGCCTGTGCTGGACATTTGTCGTTTTGGCCTCCCAGAATTTTTTACCCCCTTTTACTGGTAATAGTACACTCCAGTGAAATGTACTGAGTGGATTCCGTCTTCTACTCAGGAATGGAATGTGTGACACAGGCCTGACTCAGCCTCTGATCCATCCCTCAAGCCACAGTTAATGATTCAGATGTCAGTAGATGACCAAAGATGGTTCAATTAGAGTCCCAGGATTGCAAGAGCTAATAGGAACAAATACTCTCCCCCCGCCCACCCCCATTGGTTTTAATGCTGAGAAGAAGAACTAGACTCTTACAGAGGTGAGAATGAAGTCCACACAGCAAAAATGCATCTGAGAATTGGAGAGCAGTAAAAGACTGAAGATAATGTTTGAACAGCCACATACACCATGCCTGAAGCTAAAAATATATACGGGTTTTTGAATTGCAGCAGCCAATAAATTCCATTTTTGTTTGGTTGGTTTTGGCTTTGGCACACCTGAGTTAGGTTTTCTTGCCTTGGAACAGAATTTTGACTTAAACAGTGTTGTCATTGTAGCAGTTGTTTGAAGTTTTCAGGGATAACATACCTGATGGAGAAATGTTTTGTGTGTATGATATATGGGAAAGTCTTTAGTTATAGTCATGGCAGCTCCTCAACCCCATGATTGTGATGAGATTGGGAAGCCCACTGTAACACTGGAGAGCCCAGGTTATATCAGACACCACTAGTAGATAGAAGTTCTAACAACTTGAGCTCTGTAACAAAAATCTCATTGTACTACAAAATTATGTCTGCACCAGTGAATCCATTCTCAAGAAAAGTCTTAACTAGGAAACTAAAAGCTTTCACTCTTAAAGCTTTCATTTTCTGTTTATTCAGTTTTTTATTTGGAATGGATGCTACTCTAGGCCTTAAACTGAGAAATGCCAGGCTATTGTAGCTATTATATCTTGGTATTTGCCATTTTAATTCCTAGGACAGCACGCCCGCTTTGCCCTTGACCTGGCTAGGGAGCCAAGGAAATGCCATGGTTCTTGGTCATAAGACACACTGCAGAGATCTCTCAGTAGGAAAACAGGGCTGGCCCTTTTCTTTGGTGATGAACACAAACTGCACCCTTTTTTTCTCCCACGTGTCCTTCCGCTGCCAGCCAGTGTTGGAATCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157429-ZNF19:NM_006961:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.166
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=7.1),PF087906=zf-LYAR=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGCACAGGATGATCCC
R:
AAGGTTTCTCCCCAGTGTGGA
Band lengths:
343-2298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)