HsaINT0186529 @ hg38
Intron Retention
Gene
ENSG00000159915 | ZNF233
Description
zinc finger protein 233 [Source:HGNC Symbol;Acc:HGNC:30946]
Coordinates
chr19:44266198-44266961:+
Coord C1 exon
chr19:44266198-44266324
Coord A exon
chr19:44266325-44266865
Coord C2 exon
chr19:44266866-44266961
Length
541 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
ATGCCATTTCTTTTTCACAGGCT
3' ss Score
9.08
Exon sequences
Seq C1 exon
GAGATGGTGACATTCAAGGATGTGGCTGTGGTCTTCACCAGGGAGGAGCTGGGGTTGCTGGACCTTGCCCAGAGAAAGCTGTACCAAGATGTGATGCTGGAGAACTTCAGGAACCTGCTGTCAGTGG
Seq A exon
GTGAGCACAGGCACCTTCTGTAACTGAATATCAGCCCTCTGGACTGTCCTGCTTTCAATTATTTAAGACTTTGGGACGCTTAAAATGCTTCCCTGAACTTGGGGATGTGAATTTTCTAATTCCTCAGGGACATCTTGTCTATACCTTGTCTATTTTTCTCAAATTGCAGTTGTGAAATCTTGGTGGGTTTTGAAATCAGTTGGTGAGTTACATTATTATTGTGTTTAATGAAATGAAGTAGAAATATTATAGCTCCTTGTCAGGAACTGCATTCAGTGCAACGAAAATTGTAAGTAAAAACAGGAAAGAAGATGTGATAAAAGTAGATAATGGTTAGGATCAAATTATCTGATCACTTGATTTCAGTGATTTACATTTATGTATTTGTGTACCGGATCACAAATTAAAAGGTATTCAGACAATAGCTCATGATCACAATTTTGAAAAATACTACTTAGAGCGCATGAAAATGGTGGTGTTGGAATTAAAATTTTTGACTATAATGCATTCACTTTATATATATGCCATTTCTTTTTCACAG
Seq C2 exon
GCTATCAACCCTTCAAACTAGATGTGATATTACAGTTGGGAAAAGAAGACAAGCTTCGGATGATGGAGACAGAAATCCAAGGAGATGGGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159915:ENST00000391958:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACATTCAAGGATGTGGCT
R:
CTGAACACCCATCTCCTTGGA
Band lengths:
218-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains