HsaINT0186637 @ hg19
Intron Retention
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:13059]
Coordinates
chr19:9523271-9526418:-
Coord C1 exon
chr19:9526330-9526418
Coord A exon
chr19:9525397-9526329
Coord C2 exon
chr19:9523271-9525396
Length
933 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATTCATTCCTTTATCAACAGATA
3' ss Score
7.94
Exon sequences
Seq C1 exon
CTTCAGAATGGAAAGTGCAACTTAAAACCAAAGAGTTAGCCCTTCAGCAGGATGTTTTGGGGGAGCCAACCTCCAGTGGGATTCAAATG
Seq A exon
GTAAGATTAACAAGGATACGTCTTAGTTTTCACATTTAGAGATGATTGGGGATTCCATTATAGAAAATCAGAATAAAGCTGGGAATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAAGTGGGAGGATCACTTGAGGCCAGGAGTTCTAGACCAGCCTGGTCAACGTAGCAAGATCTTGGCGCTAAAAACTAAATTTAATTACATTAAAAGAAAAAGAAAATTAGCAGAATGAGAGCTCTTTGAGATAAGTAGCATTCCCAAAAGGGATAATGACTCTGGAGAGAGACTCAGAATACGATGACCTGGGGATGCTTGAAATCTAGCTTGACACTTATTGTTGTTTTTTTCTTAGACAGAGTCTTGGTCTGTCACCCAGGCTGGAATGCAGTGGCATGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTTGTGCCTCACCCTGCTGAGTAGCTGGGAGTACAGGCACGTGCCACCATGCCCGGCTAGTTTTTGTACTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTTGACCTGAGGTGATCTGCCCACGTTGGCCTCCCAAAGCACTGGGATTACAGGCGTGAGCCACTGCGCCCAGCCAACACTTAGGTGTTTTAGAGTTCCCCTCAAGTACACATTTGTAACTAGATAGTGAGTTTTTAAGACAATTTCATAAAACTCTACAGACATTTGAGATTAGAGTAGATGGCACAGCCTGGCAGGAGTTTTTTGTCATTCCGCTGGAAAGAAATCAAAAGGGCATTACTTATATGTGTGTAATGAAAATGGTAAACATGATAATAATCATCACAGTGTTCCTCTCTTCAGATGAGTGGAATCTGTTAATCAATCTGAACCGTCCTTTAATCATCATTCATTCCTTTATCAACAG
Seq C2 exon
ATAGGAAGCCACAACGGAGGGGAGGTCAGTGATGTTAAGCAATGTGGAGATGTCTCCAGTGAACACTCATGCCTTAAGACACATGTGAGAACTCAAAATAGTGAGAACACATTTGAGTGTTATCTGTATGGAGTAGACTTCCTTACTCTGCACAAGAAAACCTCTACTGGAGAGCAACGTTCTGTATTTAGTCAGTGTGGAAAAGCCTTCAGCCTGAACCCAGATGTTGTTTGCCAGAGAACGTGCACAGGAGAGAAAGCTTTTGATTGCAGTGACTCTGGGAAATCCTTCATTAATCATTCACACCTTCAGGGACATTTAAGAACTCACAATGGAGAAAGTCTCCATGAATGGAAGGAATGTGGGAGAGGCTTTATTCACTCCACAGACCTTGCTGTGCGTATACAAACTCACAGGTCAGAAAAACCCTACAAATGTAAGGAATGTGGAAAAGGATTTAGATATTCTGCATACCTTAATATTCACATGGGAACCCACACTGGAGACAATCCCTATGAGTGTAAGGAGTGTGGGAAAGCCTTCACCAGGTCTTGTCAACTTACTCAGCACAGAAAAACTCACACTGGAGAGAAACCTTATAAATGTAAGGATTGTGGGAGAGCCTTCACTGTTTCCTCTTGCTTAAGTCAACATATGAAAATCCATGTGGGTGAGAAGCCTTATGAATGCAAGGAATGTGGGATAGCCTTCACTAGATCTTCTCAACTTACTGAACATTTAAAAACTCACACTGCAAAGGATCCCTTTGAATGTAAGATATGTGGAAAATCCTTTAGAAATTCCTCATGCCTCAGTGATCACTTTCGAATTCACACTGGAATAAAACCCTATAAATGTAAGGATTGTGGGAAAGCCTTCACTCAGAACTCAGACCTTACTAAGCATGCACGAACTCACAGTGGAGAGAGGCCCTATGAATGTAAGGAATGTGGAAAGGCCTTTGCCAGATCCTCTCGCCTTAGTGAACATACAAGAACTCACACTGGAGAGAAGCCTTTTGAATGTGTCAAATGTGGGAAAGCCTTTGCTATTTCTTCAAATCTTAGTGGACATTTGAGAATTCACACTGGAGAGAAGCCCTTTGAGTGCCTGGAATGTGGTAAAGCATTTACGCATTCCTCCAGTCTTAATAATCACATGCGGACCCACAGCGCCAAAAAACCATTCACGTGTATGGAATGTGGCAAAGCTTTTAAGTTTCCCACGTGTGTTAACCTTCACATGCGGATCCACACTGGAGAAAAACCCTACAAATGTAAACAGTGTGGGAAATCCTTCAGTTACTCCAATTCGTTTCAGTTACATGAACGAACTCACACTGGAGAGAAACCCTATGAATGTAAGGAGTGCGGGAAAGCCTTCAGTTCTTCCAGTTCCTTTCGAAATCATGAAAGAAGGCATGCGGATGAGAGACTGTCAGCATAAGGAATGTGGGAAAACCTAAAGGTGTCCCTGTTCTCTCTGAAGACATGAAAACTCACTGGGGAGAAACCCTATGAATGTAAAAATGTGGAAGCAACTTTGTATCTCAGGTCTTAATGAACACATATGAATTCACAGTGGAGAAGACCCTGCATCAGGGAATGTGGAAATGACTTTGCTGAATTCTCAAGCCTTACCAAACACATCAGAAATCTCACTGGAGAGAAACTGTATGAATGTAGAGAATCTGGGAATACCTTTCTGAATCCCACAAACCTTAATGTGTGTATGTGAACTCACATTGGAGAGAAACCCTGCAATTTAAATGGTATGGTCTGGATGATGCCCCACTCCATATTTGTAAGCCCTAAGTCCTAGTTCCTTACACTATAACTGTATTTGGACATAGGGTTTTCAAACAGGTGAGTAACTTCAAATGAGGTTGTTGGGTTCGATCCCTAATCTGACATCACTGGTGTCCCTATAAGGGAAACTGAAGGAAGGATACACATGGAGAAGACTGTGTGGATCCACCAGAAGATGGCCATCTACAAGCCAAGGACAGAGACCTGGAACAGATGCTTTCATTATGGCCTCCAGAGGAAACCAACCCTGTCTCCACCTTGATATTGCACTTCCAGGCTCCAGAACTGTGAGGCAATAAATTTCTCTTGGTTAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652-ZNF266:NM_006631:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.063
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=4.4),PF0013017=C1_1=WD(100=12.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF0013017=C1_1=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTTAGCCCTTCAGCAGG
R:
GGATTTCCCAGAGTCACTGCA
Band lengths:
347-1280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)