HsaINT0186637 @ hg38
Intron Retention
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:HGNC:13059]
Coordinates
chr19:9412598-9415742:-
Coord C1 exon
chr19:9415654-9415742
Coord A exon
chr19:9414721-9415653
Coord C2 exon
chr19:9412598-9414720
Length
933 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATTCATTCCTTTATCAACAGATA
3' ss Score
7.94
Exon sequences
Seq C1 exon
CTTCAGAATGGAAAGTGCAACTTAAAACCAAAGAGTTAGCCCTTCAGCAGGATGTTTTGGGGGAGCCAACCTCCAGTGGGATTCAAATG
Seq A exon
GTAAGATTAACAAGGATACGTCTTAGTTTTCACATTTAGAGATGATTGGGGATTCCATTATAGAAAATCAGAATAAAGCTGGGAATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAAGTGGGAGGATCACTTGAGGCCAGGAGTTCTAGACCAGCCTGGTCAACGTAGCAAGATCTTGGCGCTAAAAACTAAATTTAATTACATTAAAAGAAAAAGAAAATTAGCAGAATGAGAGCTCTTTGAGATAAGTAGCATTCCCAAAAGGGATAATGACTCTGGAGAGAGACTCAGAATACGATGACCTGGGGATGCTTGAAATCTAGCTTGACACTTATTGTTGTTTTTTTCTTAGACAGAGTCTTGGTCTGTCACCCAGGCTGGAATGCAGTGGCATGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTTGTGCCTCACCCTGCTGAGTAGCTGGGAGTACAGGCACGTGCCACCATGCCCGGCTAGTTTTTGTACTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTTGACCTGAGGTGATCTGCCCACGTTGGCCTCCCAAAGCACTGGGATTACAGGCGTGAGCCACTGCGCCCAGCCAACACTTAGGTGTTTTAGAGTTCCCCTCAAGTACACATTTGTAACTAGATAGTGAGTTTTTAAGACAATTTCATAAAACTCTACAGACATTTGAGATTAGAGTAGATGGCACAGCCTGGCAGGAGTTTTTTGTCATTCCGCTGGAAAGAAATCAAAAGGGCATTACTTATATGTGTGTAATGAAAATGGTAAACATGATAATAATCATCACAGTGTTCCTCTCTTCAGATGAGTGGAATCTGTTAATCAATCTGAACCGTCCTTTAATCATCATTCATTCCTTTATCAACAG
Seq C2 exon
ATAGGAAGCCACAACGGAGGGGAGGTCAGTGATGTTAAGCAATGTGGAGATGTCTCCAGTGAACACTCATGCCTTAAGACACATGTGAGAACTCAAAATAGTGAGAACACATTTGAGTGTTATCTGTATGGAGTAGACTTCCTTACTCTGCACAAGAAAACCTCTACTGGAGAGCAACGTTCTGTATTTAGTCAGTGTGGAAAAGCCTTCAGCCTGAACCCAGATGTTGTTTGCCAGAGAACGTGCACAGGAGAGAAAGCTTTTGATTGCAGTGACTCTGGGAAATCCTTCATTAATCATTCACACCTTCAGGGACATTTAAGAACTCACAATGGAGAAAGTCTCCATGAATGGAAGGAATGTGGGAGAGGCTTTATTCACTCCACAGACCTTGCTGTGCGTATACAAACTCACAGGTCAGAAAAACCCTACAAATGTAAGGAATGTGGAAAAGGATTTAGATATTCTGCATACCTTAATATTCACATGGGAACCCACACTGGAGACAATCCCTATGAGTGTAAGGAGTGTGGGAAAGCCTTCACCAGGTCTTGTCAACTTACTCAGCACAGAAAAACTCACACTGGAGAGAAACCTTATAAATGTAAGGATTGTGGGAGAGCCTTCACTGTTTCCTCTTGCTTAAGTCAACATATGAAAATCCATGTGGGTGAGAAGCCTTATGAATGCAAGGAATGTGGGATAGCCTTCACTAGATCTTCTCAACTTACTGAACATTTAAAAACTCACACTGCAAAGGATCCCTTTGAATGTAAGATATGTGGAAAATCCTTTAGAAATTCCTCATGCCTCAGTGATCACTTTCGAATTCACACTGGAATAAAACCCTATAAATGTAAGGATTGTGGGAAAGCCTTCACTCAGAACTCAGACCTTACTAAGCATGCACGAACTCACAGTGGAGAGAGGCCCTATGAATGTAAGGAATGTGGAAAGGCCTTTGCCAGATCCTCTCGCCTTAGTGAACATACAAGAACTCACACTGGAGAGAAGCCTTTTGAATGTGTCAAATGTGGGAAAGCCTTTGCTATTTCTTCAAATCTTAGTGGACATTTGAGAATTCACACTGGAGAGAAGCCCTTTGAGTGCCTGGAATGTGGTAAAGCATTTACGCATTCCTCCAGTCTTAATAATCACATGCGGACCCACAGCGCCAAAAAACCATTCACGTGTATGGAATGTGGCAAAGCTTTTAAGTTTCCCACGTGTGTTAACCTTCACATGCGGATCCACACTGGAGAAAAACCCTACAAATGTAAACAGTGTGGGAAATCCTTCAGTTACTCCAATTCGTTTCAGTTACATGAACGAACTCACACTGGAGAGAAACCCTATGAATGTAAGGAGTGCGGGAAAGCCTTCAGTTCTTCCAGTTCCTTTCGAAATCATGAAAGAAGGCATGCGGATGAGAGACTGTCAGCATAAGGAATGTGGGAAAACCTAAAGGTGTCCCTGTTCTCTCTGAAGACATGAAAACTCACTGGGGAGAAACCCTATGAATGTAAAAATGTGGAAGCAACTTTGTATCTCAGGTCTTAATGAACACATATGAATTCACAGTGGAGAAGACCCTGCATCAGGGAATGTGGAAATGACTTTGCTGAATTCTCAAGCCTTACCAAACACATCAGAAATCTCACTGGAGAGAAACTGTATGAATGTAGAGAATCTGGGAATACCTTTCTGAATCCCACAAACCTTAATGTGTGTATGTGAACTCACATTGGAGAGAAACCCTGCAATTTAAATGGTATGGTCTGGATGATGCCCCACTCCATATTTGTAAGCCCTAAGTCCTAGTTCCTTACACTATAACTGTATTTGGACATAGGGTTTTCAAACAGGTGAGTAACTTCAAATGAGGTTGTTGGGTTCGATCCCTAATCTGACATCACTGGTGTCCCTATAAGGGAAACTGAAGGAAGGATACACATGGAGAAGACTGTGTGGATCCACCAGAAGATGGCCATCTACAAGCCAAGGACAGAGACCTGGAACAGATGCTTTCATTATGGCCTCCAGAGGAAACCAACCCTGTCTCCACCTTGATATTGCACTTCCAGGCTCCAGAACTGTGAGGCAATAAATTTCTCTTGGTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652:ENST00000588221:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTTAGCCCTTCAGCAGG
R:
GGATTTCCCAGAGTCACTGCA
Band lengths:
347-1280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains