HsaINT0186896 @ hg19
Intron Retention
Gene
ENSG00000130844 | ZNF331
Description
zinc finger protein 331 [Source:HGNC Symbol;Acc:15489]
Coordinates
chr19:54072558-54074984:+
Coord C1 exon
chr19:54072558-54072639
Coord A exon
chr19:54072640-54074857
Coord C2 exon
chr19:54074858-54074984
Length
2218 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CGTGTGGGTTTCTGTTTCAGGGT
3' ss Score
11.54
Exon sequences
Seq C1 exon
CTCTAGCCTCTCGGAATTTGTCTTCTTCAGTGGAAACCCCGAGAAGACTGATCAGTTCTTCAGTTCTAAAACAATGGCCCAG
Seq A exon
GTAAGTGTATATTTCTCTTTCCTTCTTGAGCTATGATATTTGCGTTCTGTGCATCTGCTTGTGAATTATCTGAAGCCTTTTATCTAGTCAAGCTCTTTATAATTACCTGTTTCCCAGCTCTTTCTATTCCAGTGAATGATAATGCCACGTAGCTCCGTGTCTGCCTTTTTGGGAAATCACTGAGCAGGTGATTAAGTATCTCCTGTTTGCTCCCTTTTTTGGCAAGGGTAATTTTGGAGCAGTGAAGTAGCAAAGTCCTTTGAGGGAAATATTTAAGTCAAGTCTGTGGTTTGATGAGTTAGATATGTTGGTCCCATCTGACCACATGAGAAACAGATCCTCCACTGATCATGTTTTCTGCGTAGATAAGAGGGAATGCTCATATTCGCCGGTCTGTCTTAGTATGTGCTCAGATCCCAAGCTTTATGGGACTTTTGGAAAGGGATGGGGCTGTGATTAGGACCTTTGAACAGAGGTCATGTTCCTGCCGGGAAACTGGAGGATAAATTTTATTATTGAATGGATCTCTCAGACCACAAGATGATTCTAAGTCATCTGACATCCTTATCCTCTAAATCAGAAACAGGGGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCCAGGTGGGTGGATCACTTGTGGTCAGGAGTTCAAAACCAACCTGACCAACATGGTAAAACCTCATCTGTACTAAAAATACCAAAATTAGCAGGCTATGGTGGCATGTGTCCATAATCCCAGCTACTTGGTAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGATGGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAATCAGGAACGGGGGAAAGGCAGGGTTATGGATGGTAATAAATATGAAGATCTTCCAGTATGGAAGTAGGAGATGATCACATACCCCAGAATCGGAGAAAGCCTTAGGTGTTTTGGGCAACCTAAGTGAATAACTGTAATAAACAGTCTGACTTACCTGTGTGGGAATTTTTTAAATGCTTAAAAGGAAGACTGCTTAAAATGTAGTTTGGCATGATGAACTGGAGGCTTGAAAACATTCAAACATGCAAACCGTATTTTCTTTTTTTTTTTCTTGGGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGCCATCTTGGCTCACCTCAACCTCTGCCTCGCGGGTTCAAGTAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGGATGCGCCGCCACACCCAGCTAATTTTGTATTTTAAGTAGAGACGAGGTTTCTGCATGTTGGTCAACCTGGTCTCGAACCCCCAACCTCAGGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACCCAGCAAACCCTATCTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGCCACAATCTCCGCTCACTGCAAGCTCTGACCACCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCATCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTTGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCTGCCTTGTTCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCCCCCGCCCAGCCCCAGCAAACCCTATTTTCTAAAATAAAAGTTCTTAAACAGAAATCTTGATTTTTCTTCCCCCCTTAAAAGAAAAAATGCTGTAGGAATCCACACTTGTTGAGAACTTATAAGGCAGGCACGTAGCAGACACTGCTTGTAAGCAAGAAGAAAACTTGGATTGTTTTATCCACTTCCTGGCAGGTTTGACTAACTGAGGATTCTGCACAGTAAAGTCATTTTCTCTGCAGCGGTAGAGCTCTTCAGTGACATGCAGGCATTCTGCTTCCGTCACAGTTACAGTGATGTCCTTACCGCCCCTTGCCGATGTCACGGGTGTTCAGTCTGCTCACGGTGTTCACCCTACCCAGAGGGTGGCCTCCTGTCTCCTTCATCTGGAAGCTGTTTCCTTTCATTTCATCATGCACGTGTGGGTTTCTGTTTCAG
Seq C2 exon
GGTTTGGTGACGTTCGCCGACGTAGCCATAGACTTTTCTCAGGAGGAGTGGGCCTGTCTGAACTCTGCTCAGAGGGACCTGTACTGGGACGTGATGCTGGAGAACTACAGTAACTTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130844-ZNF331:NM_001079907:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3),PF0192711=Mut7-C=PU(25.0=83.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)