BtaINT0165293 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016513 | ZNF331
Description
Bos taurus zinc finger protein 331 (ZNF331), mRNA. [Source:RefSeq mRNA;Acc:NM_001103251]
Coordinates
chr18:61023900-61027673:-
Coord C1 exon
chr18:61027589-61027673
Coord A exon
chr18:61024036-61027588
Coord C2 exon
chr18:61023900-61024035
Length
3553 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
ATGTCCTTCTCCTCCATCAGGGA
3' ss Score
9.21
Exon sequences
Seq C1 exon
ATCTGGCATCTCTGGATTTTGTGTCTTCAGTAAGGGCGACCCCAGGAGCACTGATCAGTCCTTGAATTCTAGAACTATGGCCCAC
Seq A exon
GTGAGTATGTTTTGCATCTTGAGCTGTGATGTCTGGGTCCTGTGCATACTTCAGTGAAATACTGTGAAGCCTCCTGCCCAAGTGAGTCCCACCAAAGACCTGCTCCCCTGCTCTTCCTGCTCCAGCAAATAATGATGCCATGTAGCCCTGTGCCCACCTCTGTGGCTGAAGTTTTTCACTGAACCCTTGACCTAGTTACTCAGTGTCTCTCCTCTGCTCACTTTTTTGGTCAAGAGTAATTGCAACAATGGAAGCAGAAACTACCTTGAGAAGTATTTGAGTCAGGTCCACAATTTGATGAGTTCTAGATGTTGGTCCCATGTGACCACATGAGATTCCTCTTTCACCTCCACTGATCTTCCCAGGCTCATCATCCTTTACGAAGAATTGGAGTGTGATGAAGCCCTGGCTCAGATCATGTTCCTGTCAGGGGACTCAGGAGATGAATTTTGTTTTAAACAGACCTGTCTCTGTGTTTCCAAATCGTTTAATACTTATTTCCTCTAAATCAGGAAAAAAGAAAAGGCAGGGTTAGTGGATGATTAACAGGTAAGAAGGTCATTTCAGGTAAAAGTAATAGATGACCATATACTCCTGGAATTGGGGAACTTAAAGACATTTGACTCAATCTAAATGTGTGACTGTAATAATTCAGTCTAATCCGTTCATATTGACAACTTACAGTGAACAGTGTCAGATTTGTGATCTCGGAAGAAGATTTAGCTTCAGAATCAGGGACCAGGCTTGATCACTCAAAAACTTTTGTGTAGTAGAGTTTTATTAAGAGACAGAGAAGCTTCTGACATAGACATCAGAAGGGGGATGGAGAGTGCCCCCCTTGTTAGATTTTAGCAAGCTGTTTTTTGTTTATTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGCAACCCCATGAATCTCAGCACGTCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACCCAGACTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCTTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTTGCATGAGGTGGCCAAAGTACTGGAGTTGCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTCATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAACATCAATACTTCGGTGCTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTACAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCAAAAAATAAAGTCTGACACCGTTTCCCCATCTATTTCCTATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACTTTCACTTTCATCAAGAGACTTTTGAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCGTTTCTCATGATGTACTCTGCATAGAAGTTAAATAAGCAGAGTGACACTATACAGCCTTGACGTACTCCTTTTCCTATTTGGAATCAGTGTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAGATTTCTCAAGAGGCAGATCAGATGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTCTTGTGATCCACACAGTCAAAGGTTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCCATGATCCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAATCAGCTTGAACATTAGGAAGTTCACCGTTCACGTATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTAGCGTGTGAGATGAGTGCAATTGTGCGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCGGAGTTCTCCAAATGTGCTGGCATATTGCATGCAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCCACTGGAATTCCATCACGTCCACTAGCTTTGTTCGTAGTGATGCTTTCTAAGACCCACTCCACTTCACATTCCAGGATGTCTGGCTCCGGGTCAGTGATCACACCATTGTGAATTTCTGGGTTGTGAAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCATCTCTTCTTAACATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATTGAGCCCATCTTTTTGTTTGTTAGAAAGCTATTAATCAGATAAGAGAGGTGAGGGAGTTTCACCTCAAGGCTGAGGGAGTTTCACCAGTCCCACCCCCCCACAATATGCATTTTTGAGGTAGGATAGAACAGGTGTGTCCTCCCCCAGCCATAAAACAATTGATATGAATACTGGTTTGTTGAGCTGTTATCAGCCCAAGGTTTGAGAAAAGAAAAAAAGTTAGTGTTAGGTGGAACCATTTTGAAGAAAGGCAAATTCCAAAGCAAATACATAATTTCATTAACATAAGCTTAAGAAAAGCATTTCCATAAGAAAAGCACATTGGTTAGCTCAAGGTTTGAGAAAAGTTGAGTTCAGGTGGAACTAGGTATCGTCATGGCAACACAGAATTTTAAGAGAAACCCCCTTTTAATTTTGTATAGACAAAAAAATCTGTCACTTGTAGTTTGTTTCTTCCTGCCGCTTCAGGGCGAGATTAAACAGTTGCAGCCTGTTTCCTCCTTTGGAGACCCCTGGCCTTCCTGCCTGTTACCCTCTCAATATGATGGAGTAAAAAAAAAAAAAAAAAAACAAACTGCTTTTGTCATCACAAAGGCCGACTGTGTAAAAGATAACCTGTCAAAATGATGAGCCTGAAGCTTGAAAACGTTCAAACCTGCAATCCTGATTTTCTAAGATAAAAGATTTTATATTCAGGAAGCAAACCCCTGGCTTTTTTTTTTTCCTTTCTCCTTAAAGAGAACAGAAATGCTATAGGAATGCACACTTGCTGAGAATTTATGAGACAGGCATGTAGCAGGCTCGGTACTTGTGAACAAGAGAAACCTGGGCTCGTTTTAGCCATTTCCTGGCAGAATGGCATGGTTAGAGTTCCCCAGGGTGTCGATTGTCTTCCTTGCAGCAGGAGGGGCTAAGCGTCAGTCGCAGCGGTGACCTCCCTGGCCCCCACCCAGGTCCCAGGCCTCTAATCTGCTCACTGTGTCCACCCCTGCACAGAGTAGGGGCCTCCCTCCCCCTCCTTCATCTTCAAGTTATGTCCTTCTCCTCCATCAG
Seq C2 exon
GGACGCAAGGGTTTGGTGACCTTCTCGGATGTGGCCATCGACTTCTCTCAGGAGGAGTGGGCATGTCTGGACTCCAGGCAGAGGGACTTGTACTGGGATGTGATGCTGGAGAACTACAGTAACCTGGTCTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016513:ENSBTAT00000021950:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development