HsaINT0186896 @ hg38
Intron Retention
Gene
ENSG00000130844 | ZNF331
Description
zinc finger protein 331 [Source:HGNC Symbol;Acc:HGNC:15489]
Coordinates
chr19:53569304-53571730:+
Coord C1 exon
chr19:53569304-53569385
Coord A exon
chr19:53569386-53571603
Coord C2 exon
chr19:53571604-53571730
Length
2218 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CGTGTGGGTTTCTGTTTCAGGGT
3' ss Score
11.54
Exon sequences
Seq C1 exon
CTCTAGCCTCTCGGAATTTGTCTTCTTCAGTGGAAACCCCGAGAAGACTGATCAGTTCTTCAGTTCTAAAACAATGGCCCAG
Seq A exon
GTAAGTGTATATTTCTCTTTCCTTCTTGAGCTATGATATTTGCGTTCTGTGCATCTGCTTGTGAATTATCTGAAGCCTTTTATCTAGTCAAGCTCTTTATAATTACCTGTTTCCCAGCTCTTTCTATTCCAGTGAATGATAATGCCACGTAGCTCCGTGTCTGCCTTTTTGGGAAATCACTGAGCAGGTGATTAAGTATCTCCTGTTTGCTCCCTTTTTTGGCAAGGGTAATTTTGGAGCAGTGAAGTAGCAAAGTCCTTTGAGGGAAATATTTAAGTCAAGTCTGTGGTTTGATGAGTTAGATATGTTGGTCCCATCTGACCACATGAGAAACAGATCCTCCACTGATCATGTTTTCTGCGTAGATAAGAGGGAATGCTCATATTCGCCGGTCTGTCTTAGTATGTGCTCAGATCCCAAGCTTTATGGGACTTTTGGAAAGGGATGGGGCTGTGATTAGGACCTTTGAACAGAGGTCATGTTCCTGCCGGGAAACTGGAGGATAAATTTTATTATTGAATGGATCTCTCAGACCACAAGATGATTCTAAGTCATCTGACATCCTTATCCTCTAAATCAGAAACAGGGGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCCAGGTGGGTGGATCACTTGTGGTCAGGAGTTCAAAACCAACCTGACCAACATGGTAAAACCTCATCTGTACTAAAAATACCAAAATTAGCAGGCTATGGTGGCATGTGTCCATAATCCCAGCTACTTGGTAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGATGGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAATCAGGAACGGGGGAAAGGCAGGGTTATGGATGGTAATAAATATGAAGATCTTCCAGTATGGAAGTAGGAGATGATCACATACCCCAGAATCGGAGAAAGCCTTAGGTGTTTTGGGCAACCTAAGTGAATAACTGTAATAAACAGTCTGACTTACCTGTGTGGGAATTTTTTAAATGCTTAAAAGGAAGACTGCTTAAAATGTAGTTTGGCATGATGAACTGGAGGCTTGAAAACATTCAAACATGCAAACCGTATTTTCTTTTTTTTTTTCTTGGGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGCCATCTTGGCTCACCTCAACCTCTGCCTCGCGGGTTCAAGTAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGGATGCGCCGCCACACCCAGCTAATTTTGTATTTTAAGTAGAGACGAGGTTTCTGCATGTTGGTCAACCTGGTCTCGAACCCCCAACCTCAGGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACCCAGCAAACCCTATCTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGCCACAATCTCCGCTCACTGCAAGCTCTGACCACCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCATCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTTGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCTGCCTTGTTCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCCCCCGCCCAGCCCCAGCAAACCCTATTTTCTAAAATAAAAGTTCTTAAACAGAAATCTTGATTTTTCTTCCCCCCTTAAAAGAAAAAATGCTGTAGGAATCCACACTTGTTGAGAACTTATAAGGCAGGCACGTAGCAGACACTGCTTGTAAGCAAGAAGAAAACTTGGATTGTTTTATCCACTTCCTGGCAGGTTTGACTAACTGAGGATTCTGCACAGTAAAGTCATTTTCTCTGCAGCGGTAGAGCTCTTCAGTGACATGCAGGCATTCTGCTTCCGTCACAGTTACAGTGATGTCCTTACCGCCCCTTGCCGATGTCACGGGTGTTCAGTCTGCTCACGGTGTTCACCCTACCCAGAGGGTGGCCTCCTGTCTCCTTCATCTGGAAGCTGTTTCCTTTCATTTCATCATGCACGTGTGGGTTTCTGTTTCAG
Seq C2 exon
GGTTTGGTGACGTTCGCCGACGTAGCCATAGACTTTTCTCAGGAGGAGTGGGCCTGTCTGAACTCTGCTCAGAGGGACCTGTACTGGGACGTGATGCTGGAGAACTACAGTAACTTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130844:ENST00000511154:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains