HsaINT0187123 @ hg19
Intron Retention
Gene
ENSG00000197024 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:18373]
Coordinates
chr7:148851037-148863376:+
Coord C1 exon
chr7:148851037-148851432
Coord A exon
chr7:148851433-148863249
Coord C2 exon
chr7:148863250-148863376
Length
11817 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
CCATGTGATTGTAATTTTAGGTG
3' ss Score
6.96
Exon sequences
Seq C1 exon
ACATCTGAATGGGACTCCGAGTGCCTTACATCCCTGCAGCCCCTTCCTCTTCCTACACCCCCAGCAGCAAATGAGGCACACCTGCAGACAGCAGCTATCTCTCTGTGGACAGTGGTGGCCGCCGTGCAGGCTATAGAGAGGAAGGTGGAGATCCACAGCCGGCGACTCCTACACCTGGAAGGTCGGACAGGGACAGCAGAGAAGAAACTAGCCAGCTGTGAAAAGACAGTTACCGAGCTTGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGAACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACTTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTCCCTCCAGGTATTAAGGGAGATATCCCAAAG
Seq A exon
GTAATACCTTCATTTCTAGATGTAAAGTGGTACCACTAGAACTTACATTAGTAGTAGTCTTGGTCATTCAGTTACTTAGATTTTTTATTTCCTTTTAAAGTTTCTTAAAATATCTCAGTCTGAAAGAATCATGAAGGTGTTTTATGTTTGTCTATTTGGGAAACATTTTATGTTCAATTTAGTACCCATTTAGAGTGCCAAGATTCAGATTGGAAACCTCTTGCTGGACCAAAGTTGGCTATCTGGTAGATGGATTTTTTTTCTCTTTTGGTTTCTCCTACCCATTACCCATGAGCCGCTTCTTTCTTCGTTAACTTGTGTGCCAGATTCTTGGGGAGGAGACTACATAAATATTCTTTTAAATCAGTCAATTTGAGGCTGGGCGCGGTGGCTCATCCCAGCACTTTGGGAGGCTGAGATGGGCAGATACCTGAGGTCAGGAGTTTGAGACCATCCTGGCCAACGTGAGGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTAGCACATGCCTATAATCCTAGCCACTCGGGAGGCTGAGGCTGGAGAATAGCTTGAACCCAGGAGTTGGAGGTTGCAGTGAGTCGAGATCATGCCACTGCATGCCAGGCTGGGCAACAAGAGCAAAACTCCTTCTAAAAAAAAAAAAAAAAGGCCTGGCGAGATGACTCACACCTGTAATCCCAGCATTTTGGGAGGCTGAGGCAGGTGGATCTCCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTTAAAATACAAAAATTGGCCAGGTGTGGTGGCTCACACCTGTAAACCCAGCACTTTGGGAGGCCGAGAAAGGCAGATCACAAGTTCAGGAGTTCAAGACTGGCCTGGCCAACAAGGCGAAACCCCATCTCTATTAAACATACAAAAATTAGCTGGGCTTGGTGGTGGGCGCCTTTAATCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGACAGAGGTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCGTCTCCAACAACGACAAAAAAGAAGAATCACCTGGTAGGCTTTTAAAATTTTGGTGAGCATCACATCCAGATTCTGACCTAATAGGTCCAGGATGGAGCTTAAGCATGAATAATTTTTTAAAAACCTCCATAGATGATTCTAATATATGACTAGGGTTGTGAATCACTGATGTGTAGGGCATTTAAGACCAAGGAAAGGAATTTGGATTTTTAACTAAGGTGTAATGAGGAGAAATTGGAGGGTTTGAAGCAGAGGAATTATATTTGGTTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGTCCGTCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCGCTCGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCGCGCCCGGCCAGTTTTATATATTGAAAGAATCCCTTTGGCTGCTTTGTGGAGGATGGATCGTAGGGGAAGAACTGAAGAAGGGAGGAAATACTAAGGCAGGGAGGGATGCAAGTGGCTTGGATGAGGGTAGCAGTTGTAGAGATGGAGAGAAGTGGACAGATGCAGGATGTTTGGTGGTAGAACTGACAATAAGAGTTACTGATGGGAAGGCAGGGTGCATTGGCTCACGCCTGTAATCCCACCACTTTGGGAGGTTGAGGCGGGCGGATCATGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGATGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGAGCGTGGTGGTGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAAGTTGAGGGGGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGACCAGGCAACAGGGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAGAGTTACTGATGGGAATTAGGAAATAAGGCATTAAGAACAGTAATTGTAGGCCAGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTGAGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAATATACAAAAAAATTAGCTGGGCCTGGTGGCGCATACCCGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGAAGGCGGAGATTGCGGTGAGGGGAGATTGTACCACTGAACTCCAGCCTGGGCAACAAGAGCGAAACTCCATTTCAAAAAAAAAAAAAAGAATAATTATAAATTTACTGTGTGGTAATTTAGTTAGAACTTACTATTCTAAGTGTTCTACTTATTTTAAGGCATATGAGTCTCAGAAGAACCCAACTTGCCCGAGGTCACATAGTTAATATAAATAACAAAGTTGTGTTTTAACTAGGTTGGCTCCAGAGCAGATGCTCTTAACCACGTTAGGTTTACTGTCTCAGGCTTTCGGCTTGAAGAACTGGGTAGATGGTGTTGGAGTTTCCTTGAGGGGAATACCTTGGGAAAGTGTGGCCTTGGGGGTGGGAGGAAATTAGGAGTTCCCCTTTGACAATGTTAGGTTTGAAATGCCTGTGATACTTTCAGGAGAGACGTTAAAAGTGGACTAAGAAAGTCCAGGACAGGGCGGGGCACGGTGGCTAATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGCGACCATCCTAGCTAACACGGCGAAACCCCGTCTCTACTAAAAAATATATAAAATTAGCCGGGCGTGGTGGCGAGCGTCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATGGCGCCACTGCACTCCAGCCTGGGCGACAGAGACTCCGTCTCAAAAAAAAAAAAAGAAAATCCAGGACCAGCAGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGTATCACGAGGTCAAGAGATCGAGACCATTGTGGCCAACATGGTGAAATCCCGTCTCTACTAAAAGTACAAAAATTAGCTGGGCGTGGTGGCGCTCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGACAGGAGAATTGCTTGAACTCGGGAGGCGGAGGTCGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGCGACAGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAGAGTCCAGGACCAAGTCCGGTGGTAGGAGGAGCCGGCAGAGGAGATTAAGAAGGAAAGGCTGGGCCAGCGCCGTGGCTCATGGTGGCAGGCGCCTGTAGTCCCTGCCTGTAGCTACTCGGGAGGCTGTGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGCAGTAAGCCGAGATCGTGCCATTGCACTCCAGTCTGGGCAACAGAGCAAGACTCCGTCTCCAAAAAACGAATAAAAATAAAAATCAAAAAGAAGGAAAGGCTGATGAGGTAGAGGAAAAAACAAACAGGAAAGTATGTGGTGTCACAGGGCCAAGGAGAAAAAAAAAGCATCCCAAGTAGAGAGTTGTCATTTATGTTGAATATGTTACTGGGAGGTTTAGAAAGATGAGGACATTGAGTATGATTTGTCTGCATAGATGTCACTGGTGGCTTTTACAATAATTGCTTGTGTGGACTGGTGGGATAGAAGACTGAATGGAGCAGATTTTGAAGAGTGAATGCGAAGAGAAAAAATGGAAAGATGATCAACAACTTTTTCAGATTTTTCTGTGAAGTGGGGTGGAGATGAGGAAGTACCTGGGAAGGATATTGGAGCCGTTTCTCATAGAGAACCTTCTCCATAGTACATTTTGTTTGTGCATCTGGAGCTCCTCCAGAAGTTCCTTGGGATAATTTAAATTTAGTATTCATGGCCTGGCGTGGTATCTCACACCTGTAATCCCAGCACTTTGGGAGGCCTAGGCAGGCAGATCATCTGAGGTCAGGAGTTGGAGACCAGCCTGACCAACATGGTGAAACCCTGTCTCTACTGAAAATACAAAATTAGCTGGGCATGGTGGCGCATTCCTCTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCATGCCATTGCACTCCAGCCTGGGTGACAGAGCGAAACACCGTTTCAAAAAAAAAAAAAAAGAAAATTAGTATTTATTTTAAGAATAATAGTAAAGGTAAGTTAAAATTATTGTCTTATCTGGAATAAGTGGTTAACAGTTAAACTGTCCATCTTAGACTCTAAAATCATCTATAAAGTAATGTGATTTCCCTTAAAGATTTTTTTTTTTTGAGATGGAGTCTCCCTCTTGCTCAGGCTGCAGTGCAGTGGCGTGATCTCGGCTCACTGCAACTTCCACTTCCCGGGGTCAAACGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGTGTGTACCACCACGCCTGGTTAATTTTTGAATTTTTAGAGGAACTCTGACCTCAAGTGATGCACCTGCCCTGGTCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCTGGCCATCTCTTAAATATTTCTTAATGAAATTAAAATGCATTTGATTCTAGTCAAAATGTATTAAAGATTTACTAAATTGAAATATGAGAAACTTTTGTGTCCTTGCTTTGTTGAAAATGCTCTTTTTCGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCTGAGGCAGGTGGATCATGAGGTCAAGAGATCGAGACCATCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCATGGTGGCGGGTGCCTGTAGTCCCAGCTACCCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGCTACAAAGTGAGACTCCGTCTCAAAAAAAATGCTCTTTTTCTGCTCTTAAATTTGAATGCCAAGTTCCAGGTCCAAAATAACTTTTCCTCAAAAAAAAAAAAAATTTTTTTTTTTGAGATGGAGTCTCACTCTGTCTCTGTTAGAAAGATGGAGTGCAGTGGCACAGTCTCCACTCACTTCAGCCTCCACCTCCCAGGCTCAAGCGATTCTCGTGTCTCAGTCCCGAGTAGCTGGGACTAAAAGCATGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCCCCATGTTGGCCAGGCTTGTCTCGAACTCCTGACCTCAAGTGATCCTTCTTCCTCAGCCTCCCAAAGTTCTGGGACTACAGGTGTGAGTCACCGGGCCCAGCCAGTGTGAAACTTTGATACATTTGTATAAAGTGTAATGATAAAAGGAGGATAATTAGCTGATTAGCATATCTATCACCTGAAGCATTTATCATTTCTTTGTGTTGGGAACACCAAAAAAATCCTCTTTTCTAGGCCAGGCGCGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTGACACGGGGGTCTCAACTAAAAATACAAAAAAGTAGCCAGATGTGGTGGTGGGGGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGGAAGCGGAGCTTGCAGTGAGCTGAGAGTATAGACCAGTTTATACTAGGAAGTGGGATTCTCTTCTGCATATGGCCATTCCCTACATGCAGTCTTAACCCCAGTGAGGCAGAATTCACAGTCCTCCTCTGAATGCACTCTTCAGTTTCCTTCACTTGAATGTTTTCTCCATTCCCATTAGGACTAGCCAAAGTCACATCTCTTTTTGAGTCATGCCAGCCCCATGTCTTGTCCATGTCATTCATTTGCAGATAGTCATATTCCCCTTTGGGGCAGAAACCATATTTTAGTTATCTCAATGCTTAGGGAAAACCTTGTATGTAGTGGATACTCAGAATATTTTCTTGTGTGAATTAAGTATGCTTTGCATTTGTATCTAACTCTGAGTAACTCTGAGTCCTCCACCCTCCAGAAGCTCACAGCTTTAGATTATCACCTTTCTTCTTGAAATCATTGTGAACTCCTAGAGATTGGTCTGTGCCTTATTTTTCCTGTATCCTTTCAGTACCCCATATAGTTTTCTCAGTCAGGAGGCACTTAGTAAACAGTAAAGATTTTTAGACTGAGGGGGCTAGAGTGGGGGCGGGCTGCTGGCTGAGGTGGTGTCTCTGCTCTGCACCCCAAGGAGGCCTGTCAGGAGGAGGTGGGCTTTCCCCAACGCTGCCCTCTTGACCCTTGGAGCTCTCCCAGGATTCCTCAGATTTCCCCAGCGCCCCTTTGGCACTGTGTCTCCTCCTCTTTGCCCTGCCTTCTCCCTGTCCCACCACCACCTCCTCACCCTGTCTATCCCTCCTCCTCTTTGCTCTGGCTCCTTGCCACCAGGATCTTTTCCTAACTTTTTTCTTTCCTAGTAGAGACAATGGGCTGACAACCTGACTTCCAAAAAATATTGAGGAAAGGCAAAAACTAGTTTTTAGGCCAGGTGTGGTGACTCAAGCCTGTAATTCCAGGGCTTTGGGAGGCTGAGGTTGGAGGATTGCTTGAGGCCAGGTGTAGGACACCAGCCTGGGCAACATAGCCAGACCCATCCCTACAAAAATTATGTTTCTAAAGATTGACTCGCCATAGTGGCATGTCACTTCCTGACTCGTCCCAGCTACTCAGGAAGCTGAAATCGGAGGATGACCTGAGCTCAGGAGGTCGAGGCTATAGTGAGCAATGATCACATCACTGCACCCCAGTTTGGATGACAGAGTGAGACCCTGTCTTAAAAACAAGCAAAACAAAACAAAACCAAAACCAAAAACAACTAGTTACCAGATTCTGAATGCCTAACATACAAGCATACAAGGTGGCAGGATGAGTACATAAAGTCGCAAAAAGTACTCAAGTGCCTATTAAATGAAAAGCAAACATACCAGGAAAAACTTCAGCTCCTGCTTGAAGAACTAAGAGGGGAATTAGTAGAAAAGCTAAGGACTTAGAAGAAATGAAGCTGCAGGTAATTAACTCCAAAAAAAAAAAAAAAGGGGAATTGTTAAAAGCCCAAATACAGCAAGAATTAGAAACTCCAGTGTTTTTGCAATTGGGATGAAGAAGTGGAAAAGTATAGAGCTGCAAGCTTTGCTATAAACATACATTTCTTAAATAGAATCTGAAACACTAGGAAGAAGAATTTACATGTAGTTTAGAAAAAAACTCTAAAATTTGAATTAGAGATTTATTTTTATTTTTACTTATTTATATATTTTTCAAGACAGGGTCTTGCTCTCGCCTGGGCTGGAGTGCAGTGGTGCTATCTTGGCTCACTGCAGCCTTAAGGCTCAAGTGAGACTCTTGACTCAGCCTCCCGAGTGGCTGGGACTACAGGTGTGCATTACCACAGCTGGTTAATTTTTTTTTTTGAGTCGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAGTCTCGGCTCACTGTAACCTTCGCCTCCTGGGTTCACGCCATTCTCCTGCCGCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCTGGCTAATTTTTTTATATTTTTAGTAGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCTCAAAGTGCTGGGATTACAGGTGTGAGACACTGTGCCTGGCCCCACAGCTGGCTAATTTTTAAATTTCTTTATACAGACAGGATCTCACTATGTTGTCCAGGCTGGTTTCGAACTCCTAACCTCAAGTGATGCTCCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGCATGAGCCAGTGCACCTGGCCTGAATTATAGATTGCAAGACTGGGGAAAGATGTAGAACTATATAACCAGCTGCTTAGTGTTGATCCCACAAGAGGCAACAAATGAGTAGAGGAACTTGTTTGAGAAAAAGTCCATTTGTTTCAGAAATTAAAATAATTCATAGGCTGGCTGGGCACAGTGGTTCACGCCTGTACTCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCGCCTGAGGTCAGGAGTTTGAGACTAGCCTGGCCAACATGGCAAACCCCTGGGTGGGGGGAGGGGGGCGGCGGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCCAGCCTGGGCAACAGAGCGAGAGTCTGTCTCAAAAAATATATATATATTCATTCAGAGGCTGAAGTAGCAGATTTAACGGCTGAAAAAGAGAATTCTGGTGCTCAGTTAGAAAACGTCCTAAGAATACAGGTGTGACAGTTGGCTGAGATGCAGTTACAGTCAGGTCCCAGTAGGCCAAAAATGTCACGTAAACTGTAGGTTAAATGCTCGGAAAAAGAGCCACAATCAAACAATGAACAAAATACCTGTTTTGTTTGTTTGTTTGTTTGTTTTTTTCAGACAGAGTTTCACTCCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGGAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAGGCATGCGCCATCATGCCCAGCTAATTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGCCCTTGTCGTGCAGGCTGAAGTACAATGGTGTGATCTCGGCTCACCGCAACCTCCGCCTCCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAGGTAGTTGGGACTACAGGCCTGTGCCACCACGCCCCTGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATATTGGTCAGGCTGGTCTTGAACTCCCGACCTCAGGTGAGCCACCGCGCCCGGCCAAGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCGCCATGTTGGTCAGGCTGGCCTCAAACTGCTGACCTTGGGTGATCCACCCGCCTTGGCCTTCCAAAGTTCTAGGAGCCACTGCGCCTGGCCAAAGTACCTTTTTAATCATTAAAGATTACATAAAACTGAACAAGAAAGAAATACCCTGACCAGGCTGGGAGTGGTGGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTAGGTGAATCATTTGAGGTCAGGAGTCGAGCCCCACCTGACCAATATGGTGAAACCCCGTGTCTACTAAAAATACAAAAATGAGCCAGGCGTGATGGTGTGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATTGCTTGAACCCAGGAGACAGAGGTTGCAGTGAGCCGAGATAGCGTCACTGCACTCCAGCCTGGGTGATGGAGCAAGACTCCATCTTAAAAAAAGAAAGAGGGCCGGGCGCAGTGGCTTGAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAGGGCGTGAACCCGGGAGGCAGAGCTTTCAGTGAGCCAAGATCGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAATAAAAATAAAAATAAAAAAAGAGAAAGAAAGAAATACACTGAGCACTAAAGTCAAAGAACGAAACTTTCAAGCATACTAGAAATAACAGCCATGAAACTAGAGGCAGCAAGAGTGAGCTAGAAAGGGAAAGGAAAAAGATTCAAAGTGAACTGGATGGTTTACTGTCAGACAATGAAATTCTGAGACCAGCTATTGAACACCACAAAGTGCCCTTAGTAAAAAAAGATCATATATTAATATGTAAGGCACCAGATGCCAAGGAAGAAGGTTGTAAAAGACTTCTGGCATTACAGGATGAAAAGCTAGAATTTGAAAACAAGTTAGCAGATAGAAAATGAAAGTGGATCATGATGTCTGCAAGCAATGTGAAAAGCATCAGTGTGAAAAGAAATTGTGGGAGGCCGGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACGAGGTCAGGAACTCGAGACCAGCCTGACCAACGTGGTGAAACCCCATTTCTACTAAAAATACAAGAATTAGCGGTGTGTGGTGGCGGGTGCCCGTAATCCTGGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACTCGGGAGGCAGAGGTTGCAGTGAGACGAGATCGCGCCACTGCACTCCAGCCTGGGTGTACAGCGAGACTCTGTCTCTAAAAAAAAAAAAGAAAAGAAAGAAAGAAAATGCAGAGGAAGAAAAAAACGAAAATTTTGACCTGGAATAGTAAATCAGTAGTTTTCAGATCCAAGTTACCTCACTTGCAGAGTTCGAACCGAATGCTGAAAGAAACGATGGAGACATTAAAACAGGAATGCTGAAATATAAGAAATCAAGCTGAGAAAGTCTAACTAGAAGTCAAAAAGACATTGGAAAAAGAACAGACACAGCAGTTAGAAGAAAAGCATATGCTTCATGAATGTATCTCAGGGAAATGTACAGTCAAGCTAAAGAGAAATTGCAGTGAGCTGCAGTTGCCCAGAAAAACAGGAAATCTTGCCGTGAAAACAATTGAAGAGATGGCAGGACAAGGTGTAAATCTTGGAGGCAGGTAGAGAAGAAATGGAAACAGAAAATTGGGTTTTAAATAGACAAAATGTTCCATTTGAAGAATGTACAAAGCTTCAGAAAAGACTAAAGGATACACACAGAAGACATAATGAATTTTGAAGTTTAATTTTGGTTCCTAACATGCCTCCAAAATCAATCCTGTTTGCTCTCAGTCATCAGCCATGGTATTATCCTTTCCTCCTCATGTGCACGATGAACAGCATCAAAGGGAACTCTGTACTTGGCAAAAGACTAGAGGAACTAGAAACAACACAAAGAAAACAAATAGAGGAATTTGGATCTCCTGGAGAGTGATGTTCTTAGAGAAAAGGCATTTTAAAAGAGGTGAAATCAAAGACTCAATAAAGCTTGAAGTTTTAACATACATGGTATTTAGATATTTTATTACTGCTTACCAAAATACTCGAATGTGCCTCAAGAAAAGGTACCAGCTTTATTTAAGGGACTCGTGCTGTATTGCATGAGTACTAGGATTTTAGGATTTTCTAATGACAAGTGAAGCATTAAAAGAAACCATTTCAGAGATATTTAGAATATTTATTGACCACCCTTTGAAAATGTAAAAAAAATAAAAGGAACTAATTGGAAAGAGATTTATTGAATGACTGAATTATAATGGAAGGGACTAACCCATGTGATTGTAATTTTAG
Seq C2 exon
GTGCCTGTGGCATTTGATGATGTCTCCATCTACTTTTCCACTCCAGAGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATCTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197024-ZNF398:NM_020781:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)