BtaINT0165432 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020445 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:HGNC:18373]
Coordinates
chr4:113053083-113060152:+
Coord C1 exon
chr4:113053083-113053478
Coord A exon
chr4:113053479-113060025
Coord C2 exon
chr4:113060026-113060152
Length
6547 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CCAGTGTGTCATAATTGCAGGTG
3' ss Score
8.11
Exon sequences
Seq C1 exon
ACTTCCGAATGGGATTCCGAATGCCTTACCTCCCTGCAGGCGCTCCCTCTTCCCGCAGCCCCAGCGGCAAATGAAGCTCACTTGCAGACCGCGGCCATCTCCCTGTGGACAGTGGTGGCGGCCGTGCAGGCCATTGAGAGAAAGGTGGAAGTCCACAGCCGGCGACTGCTGCACCTGGAGGGCCGGACGGGGACGGCAGAGAAGAAGCTGGCCAGCTGTGAGAAGACAGTGGCGGATCTCGGAAACCAGCTGGAGGGCAAGTGGGCTGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTAGAGAACTTGGAGAACCTGCTGAGGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGTATCAAAGGAGACATTCCAAAG
Seq A exon
GTAGGCCTTGCACTTGGACGTGGGGAGTGCAGCCCCTTGTCCTTGCTGTTGTTCAGTCGCTCGGTCATGTCCGACTCTTTGTGACCCCATGGTCTGCAGCACGCCAGGCTTCCCTGTCCTTCACCATCTCCCGGAGCTTGCTCAAACTCATGTCCATTGAGTCTGTGATGCCGTCCACCTGTCTCATCCTCTGTCGTCCCCTCGACCTTAGACTGTTAGTAACGGGTGGTCTTGGTCAATCAGTGAGGCTGGAGGAACCAGAAGTGGCTCTGTGTCTGTCTATCTGGGAAGCATTCCATGTTCAATTTACATGTTCTGGTCATGGGAAATGTCAGACTTCAAACTGGAAGACTCTTCTTAGCCCAAAGCTATCCGGCAGATGGTTTTTTTTTTTTTCTTTCTCCTACCCATTATCCCCAAGTCAGTTTTTTTCTGTATTAACCTGTCTGCTGCAATCTTGATTGGAAACAAAATTAAATATCATTGAAATCAGTCAATTTGAATTTGTTGGGAATCCTGGTTTAAAAAAAAAAAAAAAGAGGACAGAGGAATGAGATGTAGAGTCAAATGGTTGGTGTGAAGATGGGGGGCTGTCTGTGGGGCTGGGATCCACGGGGGGCCTGTCCTTCACTCTTTACAAGGTGCGCTCTAGTGCTTGGGCCCAGCCTCTCCAGAGGGAATAGCCCATAAAACAACAGGAAATAAACGCCATTCTTGAGCTCTGGAAGACAGAGGCAGCTAGTTTCCAAACATGCCTGTTTATTTATTCATTCATTCAACAAGTATGTCTTGAACACGTACTGTTTGCTTGGTATCTAGTTCCTGAAGGCACAGCAGTGAACAATTCATGCAAGCTCCCCTGGAGCTTAAATTTTAGGGGGAAAGACGGTACAAATAAACAAAATAAATCCATTTAAGTGCCTCAGTGAAAAATAAAAGTGTTATCTGGTGATTTCTTTTTTAGATTGGATGTCAGAGAAGGTCTAGTAAAGTATTTAGGCTAAGAGTAAATGACAGGAAGGACCCTAGTGGGAGAAGGTCTGAGCAGGAACGTTCCAGGCAGAAAGAATACCTAGTGCAAAATCCCAAAGGCACAAACAAACTTGGATCGCCAAGAGGAAGGAAAAAGACCAACTGGCTGGTGTGCCGTGAACAAGTAGAGCATGTCCAGAGACACGGGGTGACTCGTTAGGGCAGGGCTTTTCAGCCCTGGTTCTACAGGAGTCATCTGGGAGACTTTGAAAATTCTGATGGGCATCATGGCTAGATGTTCTAACTTAGCAGGTTCAGGATGGGGCCTAACCATTGATCTTAAAACTCCATAAACGATTCTAGCATGCGACTCTGGTTATAAACCACCAATGTAGGGCCCTGGAGACCAAGGTGAGGAATGTGGTCTTTATCTGAATTAGAATGAGAAGGTTGGAAGGTTTTAAGTGGAGGAGTTGTATCTGGTTTATATTCTGAAAGAATCTCTTTGGCTGCTACCTGGAAAATGGCTCACGGGGGTAAGAACAGAAGCAGGGAGAAAAACCCTAAGGCACCTGTCAGGGCAGGAGGGCCAAGAGCAGCTTGGCTGAGGGTAACAGCAGTGCAGGGGGAGACAAGTGGGCAGATTCAGGATGTTTTGATGGTGAAATTGACAGTAAGATTTACTGATGGGAATTAGGGAATGACAAATTAAGAACAATACTAATTGTAAATTTACTGCATGATAATTTCTGAGCACTTACTGTTGTAAGTACTTTGGTTACTTTCATAAGAAGCCTAACTTGCCCAAGCTCATACAGTTAGTAAATATAAATAGTAGAGTTAGATTGTGACACAGTTGGCTCCAGAGCAGGTGCTCTTAACCACAGACTCTCGGGTTTTTGACTTGGAGGTCTGGGGGGATGGTGTTGGCGTTTACAGAGGTGGGGAAGGAATTAGTGCCCCTTTGGCGGCGTTAGGTTTGATATGCCTAGGATATGTTCAGGAATGATGCTAAGCAGTCTCTGAAGCTCAAAGGTGAGAAATATTTGGAAATCATTGATGTGCAGATTGTATTGCAAGTTATGAAGGCAGAAGCGATGACCTTGGGAGAGAACGTGGAGAGGCAGGACAAATGAGTCCAAGGACCAAGCACCAGGGGCGGGAGTGGTAGCCAGTGAGTGTGTGGGTCACAGGGTCAAGGGATGGTGGTCGTGTGGGCTGATATGTTGCTGAGAGGTCTAGAAAGATGAGGATGGTGAATGTAGTTTGACAGCACAACTTCACCGGGGACCTTGCAGGAGCTGCTGCAGGGCAGAGTGGGGGATAGAAGACTGAGTGTGGGGTGGGGAGCACACAGAGGAGATGGAGACTCCGTCAAGGAACAGGTGAGCAGCTGGCCGGGAAGGTCAGAGTCAGCATCTGAGAGAGAACCTTCCCCTCTGTATTTTGTGTGTGTACCTGAGTGCTTCCTGAATTTCTTTGGAGTAATTTAAACTTGGTGTTGGGCTATAAGAATAGCAGAGAAGGTAAGTTAAAGTTACTTACTGTCTTACATGGGTAAATGAATAACATTTAAACTGTCCCTCTTAAACTTCCAATTTGTATATAAAATAATGTGATTCCTCTCAAAGATTACTTCATGAAATTAAAATATATAGAAGATTTACTAGATTGAAATATGGGCCATAGGGACACTTTCATGTCCTTGATTTGCTGAAAATCCTCCTACTCTGCCCTTGTTTTTGAATGTCAAGTTCAAAATAATTCTCCCTCAAAAATTGTTTCTTAATTTTCATTTTTTGAATTGTGGTAAAATATGTGTGACGTAAAATTGACCATTTTAGGGGAGGGGGGTAAAAGAAAAAACATTTACCATTTTAACCATTTTAAACAGACAGTTCAGTGGCATTAAGTACATTTCCCTTGTTACGCAGCTATCACAAGCATCCATCTTCAGAACGTCTTCATTTTGAAAAACTTTAGTGATGTACCTATAGATCCTCCCAGGACCCCCTCCCCTAGCCCCTGGTGACCCCCGTCCTGCTTTCTGTCTCTGTGAATCTGTCTGCTCCAGGTCCTCATCTAGGTGGGCTCATACTGTATCTGTTTGCTTGTGAGGGAGTATTTTCCTGGGCATGACACCTTCCAGATTAATCCATGTCCTGGCAGGTGTCAGAATTATCTTTTTAAGGCTGAGTAATATTCTACTTCTCTCACTGTTTTAAAGGCACCAGTCCTTTTTTTCATTACATCAAATGCCATTGGTGAAAAGTTTAATAACAAATCAATTCTCGTTTGTAAGAAATATTTTTTTTTCTCTATCTGGAAGCTTTTATCTTCTGTTTGTACTTGTTATGTCTTGGGTGTAGGTCTTTTAAAATTTATGTTGGGCACTTGGTGTCACCTTTCACAATCAGAAGACTGATTTTCCGCTCTGGGAAATTTTATTCTTGATTCTGTTTTTACAGTCTTTTGTTTCCCCCGTCCACATTTGTTTTTCTGTCCTCTTTGTGGATTACTGTTTGACAGATGACGGATGCTTGTCTTTGTCTCTTTAACTTTTCCTTCATATTTTTCACCTTTTAAACTGGAGTTCTGTTAGTTTTCTTTCCAGCCTTTCTGACTTTTAACAATTACATATTTAATTGTAAAGAGTATTTATTTTCTCCTTTTTAAAAGCAGCCTGAATTTTTCTTTTTTAACGGATGCAATATCGAATGTCTCTGGGAATATGTGTTAGAGCTTTTTAAAATATATTTTTTTAACCTAGGATTTTTTTGTAGTGTATGTTCATCTCGATGCTGTTAATTTTACTTACTTATTCATTCATTCATTTATTTTATTTCTTGGCTGCACTCTAGAGCACAGGCTCTAGGCACATGGACTCCAGTAGTTGCTGCACGTGGGCTCGGTAGTTGTGACTTGCTGGCTCTAGGGCACGTGGGCTCAGAAGTTGTGACCTGTGGGCCCCAGTGTGTGCAGGCTACAGTAGTTGTGGCACACGGGCTCATTGCTCCACAACATGTGGAATCTTCCCAGACCAGGGATTGAACCCGTGGCCCTTGCTTTGGCAGGTGGATTCTTAACACTGTTCCACCAGGGAAGTCCAGTTTTACTTTTTTTTTTTTTTAATTTAGCTACACTGAGTCCTAGTTGTGGCTCGCACTCTTAGTTGTGGCATGTGGGATCTAGTTCCCAGACCAGGGATCGAACCCAGGCCCCCTGCATTTGTGAGCTTGGAGTCTCGGCCCCTGGACCACCAGGGAAGTCCAGTTTTACTTTTTTAATATTGAGTAATCCTTGGTTGGTTGTTCATATTTATAAGTGAAGGATTTGATTAATAGGGTAATTAGTGGAACCTTGCATTTTTCTCTACCACCGTGTCAGTCTTTTTAAGCAAAGGATCTTTCCTTTTCACGAGAGGCTCTCTCCTTAGATGCCCCATATAGGTGGGCTTTGCTTTAGGGTGCCATGCACGGAGCAAACAGGCAGTGCGGGGGTCACCAAGAGGCCAGGAGTGAGGCAGGACTCTGAGATGTCAGCCACACCGGGATGGGGTAGGATGGGCCAGTATGGGTACTGTCTCCAGACAGGTTTTTAGATTTCTTTAGAGATGAAGTCTGGGTTTCGGCTTTGGGGTAAATGCTTCTTTACCAGGGCTGATGAGGACAAGAGAGGGGGCCCTGCTGTTCCAAAGATAGACCTTCAGACTGCAGTTTCTAACCACTGTTACTCCTACTCGGTGTCTCTGCCAGCTTTGAGCTTGCAGTTCTCTGCATTCCTCGCTGCAGTCCCTGTGCGTTGTCAGAGACGCCGTTTCCTTGTACCCAGGCCCCAGCACTGGCGCATCCTCTAGGTCTCAGTGAGAAGCTTGTCAGAAATTCTGATTGGGGCATACCCTCTCCTTCTCATTCTTGGTACTGTTACTAATATTTAGTCGCTCCTGGTCTGACTTACTGTCATTTCAATGGAACTTGGGTGGGAAAGGAAGTACATGTGTGTTAAGTTCACCATCTTGAACCAGAAACCCATCCTGATTCTTCATTTTGGTCATCGTTTTATCATATGTGTTTCTGTTGTAAACCTTCACAAATCTTTTGTGTAGTGAGGTTAGATAAAACTTGACTATTGAGTTCATCTACATTTGCCCTCAGCTTGATTCTAGATGCTGAGCAGGATGTGAAATGAGTAGTTTATGATGCTAGTAGCTCCTAAGGAACAAAATTTATGGTTGATGACACAGATGAAGCAATTAGAAAATGTAACTGCCTCACAGAATTGTATAGACCTTTGTATTTTAAAGGATATTGAAGTTTATGAAGATGAGTATCTTTTTATTGAATTTTTTAATTTGGGGAGAAAAAAAATACACACATACACACACACACACACATATGTATCAAATTACCAGGAGTCTTTCTCATTCTCTTTCCTTTTTCCATAGCATCCTGTTTTTATTTTATGGATTTAATCTCTCTCAAATCCTTATGTTATTACTAGTAAGGTTTTTATAAAGATTCTGTTGCCTAGGTATTTCTATTTTTTCCACACTCATCCTCCCCCTCTTTTCATTTTAGTCTTTCTTGATCATGCTGTAGGATTTCTCAGTGGTCACTGATACTTAAAAGTTAATTCATACTTAAGAATAAAACTGTGGAAAGCTCTCAAGTGGGCGAAGGAAGAATGAGCCGTTATGATGATGGCAGAAGTAGAGAAGCTTTCCACTAGGTGACAGTGCCCACACCTGGTACCTTAATACCCCAGGCCCCCCTTTGGTTTCTCTACAGAAAGACATATCCATTTGCCTACGGATAAGCTCCTAGCTTTAGACAGCATTATGCTGGAAGGTGGGGTTCCTTATGACCATTCCCTTCATGCAACTTGACTCTAGCTAGGCAGAATCCATAATTGTTCTCTGAATGCATTCTCTAATTTTCCATGCTTAAGTGTTCTTCCCATTCCCATTAGGCCTGTTTATAACCTACCTATTAGGACTGACCAAAGTCCCACCTTTTCTAAACTTAGTCCAGCCTCTTTATAGCTGTTTCCAAAATCTGTTGTCAAGGTCATTAAGCTGAATATAGTCGTGTACTTCTTTTAGACTGAAACTGTATATTTATAATCTTGCTGCTTAAGATAAGCCTCGTACTTCACGGATATTCACTATAGGCTCTGTTCTGTGAATTAAACACTGCTTTGCATTTGTACCTCTCTCTATTGGTGACTAAAACTCACAGCCTTAAAGTTTGTCACAGTGAAAACATCATCAACTCTTAGAAGTTAGATCTGTGTCTTAAGTCTTGCCTGTATCCTTTTGGCATCTCACATAGGTTTTTTGTAACTAGTAGACATATATATATAGTTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCTTGGAGAATCCCACGGACAGAGGAGCCTGGCTGCCTGGCTACAGCCCTAGGGGTGCACAGAGTCGGGCATGACTGAAACCATTTAGCATGCACACAGGCATGTAGTAGAGATGTGTTTGTAGTAGAGTGATTGAATGCGGTGAGAGGAGCTAACCCCAGTGTGTCATAATTGCAG
Seq C2 exon
GTGCCTGTGACATTCGATGATATCTCCATCTACTTTTCCACTCCAGAATGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGAAACTATGAGTCTCTCATCTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020445:ENSBTAT00000027245:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]