HsaINT0187784 @ hg19
Intron Retention
Gene
ENSG00000197701 | ZNF595
Description
zinc finger protein 595 [Source:HGNC Symbol;Acc:27196]
Coordinates
chr4:59323-60046:+
Coord C1 exon
chr4:59323-59449
Coord A exon
chr4:59450-59950
Coord C2 exon
chr4:59951-60046
Length
501 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
ATTTTTTTTTAATAAAACAGGTT
3' ss Score
6.41
Exon sequences
Seq C1 exon
GAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATGTCTGGACCCTGCCCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
Seq A exon
GTGAGGATAACTTCAATACATAATTCCTAATACTTCCTCAGAGTTTCATTTTCTTTCTTTGCAGAATGTCTCTTGGGTGCTTCTGCTTTGCATTAATTAATTTCAGTGCCTTTCTACAAGAAAAAAATTGGGATTTGCTGGTGTAAAAAGAAAATCTTTAGGATGTTTCATCATTGCATAAACCATCTCTTTTCTTGAGCTAATTTGTGTCCTTCACTCTAGGATAGTAGTAATTCTAGAAATTCAGTGATGTAAAATATTGTTTTCCACATCTAAAATCTAATTTGCACCACTTATTTTTGATTCAGTAGTACTGGGTAGTGGAACTTAGAACCCACAGATTTAAAATATTTCAGTATTCTAAAGATTCTGTCAGGAAACAATTTTTGGATTAATTTTCTGGAGTCTTCCATAATTTCTTTATTCTACTTAGCATAGTAATAGATTGGTCATTGGAGTATCCCCAGCAATAGTCATGTTAATTTTTTTTTAATAAAACAG
Seq C2 exon
GTTTTGTGATCTCTAACCCAGACCTGGTCACCTGTCTGGAGCAAATAAAAGAGCCCTGCAATTTGAAGATACATGAGACAGCAGCCAAACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197701-ZNF595:NM_182524:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCGTAACATTCAGGGATGTGG
R:
CTGGGGGTTTGGCTGCTG
Band lengths:
222-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)