HsaINT0187784 @ hg38
Intron Retention
Gene
ENSG00000272602 | ZNF595
Description
zinc finger protein 595 [Source:HGNC Symbol;Acc:HGNC:27196]
Coordinates
chr4:59430-60153:+
Coord C1 exon
chr4:59430-59556
Coord A exon
chr4:59557-60057
Coord C2 exon
chr4:60058-60153
Length
501 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
ATTTTTTTTTAATAAAACAGGTT
3' ss Score
6.41
Exon sequences
Seq C1 exon
GAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATGTCTGGACCCTGCCCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
Seq A exon
GTGAGGATAACTTCAATACATAATTCCTAATACTTCCTCAGAGTTTCATTTTCTTTCTTTGCAGAATGTCTCTTGGGTGCTTCTGCTTTGCATTAATTAATTTCAGTGCCTTTCTACAAGAAAAAAATTGGGATTTGCTGGTGTAAAAAGAAAATCTTTAGGATGTTTCATCATTGCATAAACCATCTCTTTTCTTGAGCTAATTTGTGTCCTTCACTCTAGGATAGTAGTAATTCTAGAAATTCAGTGATGTAAAATATTGTTTTCCACATCTAAAATCTAATTTGCACCACTTATTTTTGATTCAGTAGTACTGGGTAGTGGAACTTAGAACCCACAGATTTAAAATATTTCAGTATTCTAAAGATTCTGTCAGGAAACAATTTTTGGATTAATTTTCTGGAGTCTTCCATAATTTCTTTATTCTACTTAGCATAGTAATAGATTGGTCATTGGAGTATCCCCAGCAATAGTCATGTTAATTTTTTTTTAATAAAACAG
Seq C2 exon
GTTTTGTGATCTCTAACCCAGACCTGGTCACCTGTCTGGAGCAAATAAAAGAGCCCTGCAATTTGAAGATACATGAGACAGCAGCCAAACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272602:ENST00000610261:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCGTAACATTCAGGGATGTGG
R:
CTGGGGGTTTGGCTGCTG
Band lengths:
222-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains