HsaINT0187928 @ hg19
Intron Retention
Gene
ENSG00000198551 | ZNF627
Description
zinc finger protein 627 [Source:HGNC Symbol;Acc:30570]
Coordinates
chr19:11725342-11725702:+
Coord C1 exon
chr19:11725342-11725468
Coord A exon
chr19:11725469-11725641
Coord C2 exon
chr19:11725642-11725702
Length
173 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TTTCTGGGTCTAAATTTTAGGAA
3' ss Score
8.33
Exon sequences
Seq C1 exon
GATTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGATGTGATGCGGGAAACCTTCAGGAACCTGGCTTCTGTAG
Seq A exon
GTAAGGGTGACAATATTCCTTTCCTCAGTGAATTAGAGAACAAGTGTTTCTAGCTCCTTAACACTTTGGGGAATAAACCAGGCATGGGTACAGGGAATTATGAATATAGAATCTAATACTTTTTTCATAATTTTATACTAATTCATAATGACTTTTCTGGGTCTAAATTTTAG
Seq C2 exon
GAAAACAATGGGAAGACCAGAACATTGAAGACCCATTCAAAATTCCCAGGAGAAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198551-ZNF627:NM_145295:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.381
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3),PF0202611=RyR=PU(82.0=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0202611=RyR=PD(16.0=38.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTGGCCTTTGAGGATGTG
R:
TCTCCTGGGAATTTTGAATGGGT
Band lengths:
178-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)