HsaINT0187928 @ hg38
Intron Retention
Gene
ENSG00000198551 | ZNF627
Description
zinc finger protein 627 [Source:HGNC Symbol;Acc:HGNC:30570]
Coordinates
chr19:11614527-11614887:+
Coord C1 exon
chr19:11614527-11614653
Coord A exon
chr19:11614654-11614826
Coord C2 exon
chr19:11614827-11614887
Length
173 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TTTCTGGGTCTAAATTTTAGGAA
3' ss Score
8.33
Exon sequences
Seq C1 exon
GATTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGGGATGTGATGCGGGAAACCTTCAGGAACCTGGCTTCTGTAG
Seq A exon
GTAAGGGTGACAATATTCCTTTCCTCAGTGAATTAGAGAACAAGTGTTTCTAGCTCCTTAACACTTTGGGGAATAAACCAGGCATGGGTACAGGGAATTATGAATATAGAATCTAATACTTTTTTCATAATTTTATACTAATTCATAATGACTTTTCTGGGTCTAAATTTTAG
Seq C2 exon
GAAAACAATGGGAAGACCAGAACATTGAAGACCCATTCAAAATTCCCAGGAGAAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198551:ENST00000361113:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.369
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTGGCCTTTGAGGATGTG
R:
TCTCCTGGGAATTTTGAATGGGT
Band lengths:
178-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains