HsaINT0187936 @ hg19
Intron Retention
Gene
ENSG00000221994 | ZNF630
Description
zinc finger protein 630 [Source:HGNC Symbol;Acc:28855]
Coordinates
chrX:47920198-47926449:-
Coord C1 exon
chrX:47926260-47926449
Coord A exon
chrX:47920325-47926259
Coord C2 exon
chrX:47920198-47920324
Length
5935 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACAGGAATGTGCTGTTATAGGAA
3' ss Score
4.79
Exon sequences
Seq C1 exon
GACGAAGTTCCGGAAATGGAATTACCGAGTCAGATGAGAAACACAAGTCATCAATGAATTAACAAGCAACACATTGTCACATCCAGCTGTTGAAGAGTGGTTAACTCAGCTTGATCTCCGAAGACTCTTCTGCACCCCACCCCGCCCCCAACTGCTTTCCAAAGAGAAACAGAAAATGATTGAGTCCCAG
Seq A exon
GTAAGTTATTTGTTTGCCACTTGGTTTTCCCACAACAAAATGAGAAAGGGCAATTAGTTGAAAATAAGGATTAGAGAAATTTAGAGAGAATAGATGATCAACAGGCAAAATTGCTGTGAAGATACACAGATCACCTGGCCTTACTTCATAGAAACTTAGCTAAAATTTTGACTATAAGCAAAACATTTTGACTGGCAGCTTCAGTGAAAAGGGTAACATAACATGATCAATAATGTGATTTGCATTCTCCACAAAAAGAAATCAGTCCAGCTCCTTAGCAAGTCAAGATTTCTTGGACTTTAACTTGAGGAATTTTATTACTGAGTTTTCCTGAAGGTCAGTGGTTTTCAGTCCAGGGTGGTATTGTCAGTAGTTGTTCTAAAGAGACTGTTTTTAGTTAAAGTTCTCTGGCAGGGGCTTGGAGAGTGGGATAGTTTCCTTGTTTTCCATGGCTCCTTTGCTGTCATCTCAGAGTTTGTGGGGTCTCAACCCAACTCAAGGCAGTTCCTTCTCTGCTCTTCCAATTTTAGTCGTTTTTTTTTTTCTCCCTGAAAAGGTAATCTATACATGGGGCAAAGAATGTAAACAATATAGTTTAAAAAAAAAAAGGAAGTGAAATATCTCCAATCTTACTTCTTCCTCCTTCCCCGACATAACTAGGATTATCTGGTTTGAGGAGGATCTCTTTTCTTTATGCATTTATAACTCCATCTATGTGTGTAGATGGATGTGTAAATGTGTGAAAGTGATCTCATTATTGTCATGTATTTTTTCTTTACCACACACAAAAAATACACACACTGTTTCTATTCCGTTCTGCTACTTTCTTTTCTTGCCTAATATAAAATATATACGAAAGTAGAGATTTTAGTGAACCCTTTTGTAATTACCCATCTGCAAATATTATCAACTGATAACCAAGCTTGTTTTATCTATCTTTCATCCCCACCTACTCCTATCGTCATCATCATCATGATCTAGCCAATCCCTTGTTAATATTTTGTTTAGGGTTTATACTACTGTGTTCATAAGACATAAGGGCCTGTAATTTTACTTTCTTCTATTGTTTCTGTCACCTTTTGGTATCATGTTACATTGGCCTCATGTTGGAAAGTATTCTCTTTATATTCTCTGGGAAAATTTGGGTAATATTGGTACTATTTCCATCTTAAATTTTTTTTTTTTTTGAGATGGAGTTTCACTCTTGTCGCCCAGGCTGGAGTGCAATGGCACGATATCCGCTCATTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGTCTCCCAAGTAGCTGGGATTACAAGTGCCCGCCACCAAGTAGCTGGGATTACAAGTGCCTGCCTGCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTTTGAGACAGGGTTTCACCCCAGTTGCCCAGGCTAGAGTGCAGTGGCACTATCTTGCCTCACTGCAGCCTTGACCTCCCAGGCTAACTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGGCAGGCTGGTCTCGAATTCCTGGCCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACTGCGCCCGGCCTATTTCCTTCTTAAATGTTTGAAAGAGCTCCCCAGTGAAGCCATCAGGGTATGGAGTTTTCTTTGTGGGAAGGTTTTAAATTACATATTCAATTTATTTAAAAGATATACTACCATTCAGATTTTCTATTTCTTTTTATGTCTGGTTTGGTAAATTGTAATTTTCAAGTAATTTGTCCAGTTCCTCTAAGTCAGGGGTCAGCAAACTTTTTCTGTAGAGGGACAGATCGAAGTATCTGAGGCTTTGTGGGCCATACGGCCCCTGTTGCAACTATTCAAATCTGCTGTTTTAGGTAGAAAGCAGCTATTGACAATATGTAAACCAATGAGCCTGGCTGTGATTCAATAACACTTTATTTATGGATGCTGAAGGTTGGATTTCATATAATTTTCATGTGTCATAAAATATTCTTCTTTTGACTTTTTTTTCAATCATTAAAAATGTAAAAACCAGACCAGATACAGCTAGCTATTCACGCCTATAATCCCAGCACTTTGGGAGGCCAAGGTGGGCGGATTGCTTGAGCTCAGGAGTTCTAGACCAGCCTGGGCAGCATGGCGAAACCGCATCTCTACAAAAAAATACAAAAATTAACCAGGCATGGTGGCATGCGCCTGTGGTCCCAGCTACTCAGGAGGCTGATGTAGGAGAATCACTTGAGCCCGGGAGGAGGAGGTTGCAGTGAATCAAGACTGTTCCACTGTACTCCAGCTTGGCTGATAGAGCAAGACTGTCTCAAAAGAAAACGTGTAAAACCAGTTTAGCTTGTGGGCCATTGAAAAACACATGATGGGCTAAATTTGGCCTGCAGGCTATAGTTTGCTATGTCCTGATCTACATTGTCTACTGATGTACATTGTCAAATTAATGTCCATTAAATGTCCATTTAATGTTTGCAGGATACCAGAACCTTGTTGATGGGCTGTAAAAAAGTTATTTCTAGTTTTTCTTTTATATACAGTAGTAATAATAATAAGAAGAATCATAGCTACTATTTACTCAGTGCTTATCATGTGCCAGGCACTGCTATTATAAAATATCGTGGGATTAACTTATTTAATTCACCCAGGAACCCTCTGTGCTAGGTACCATTGTTATTCCCATTTTTCAGATGAAGAAAATGAGGCACAGAGATCACACAGCTAGTACATGACCTAACCAGACCTCTCAAGCAGTGAAGTCACAAATAAAACAACCATATAAAGATATCTTTTTATATTTGTGAAGTATTTGTGTAGGCCACATTCTCAGACATGAGTGTGCTAGGTCAGAGGCACACAGACTTATAAATTTAAAGAGTATTTTTCAAATCGTATATATATATATTTTTTTGAGACAAAGTCTCACTCTGTCCCCCAGGTTGGAGTGCAGTGGCATGATCTCAGCTCACTGTAACCTCCGCCTCCCAGGTTCAAGCGATTCTCATGCCTCAGCCTCCCGAGTAGCAGGGATTACAAGTGCCTGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTCACCATGTTGGGCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCCTGCCCAGCCCAAATTGTATTTCAATACTGTGTAATCAGCTGAACATGTGGCCACAAATTGTTTACAAGAAAGCCCACCTGTTTCCCAAGGTTCCCCCTCCCTCCTGCCACCATTAGCCATCATCTGTTTTTTTCATTCTTGTTGTTTTTATGATTAAGCATTATATCTCATTTTCATTTGCTTTTCTATAGGGATTAAATAAGCTTCAGCATCTTTTCACATATTTATTTTCCATATTGTATTTCTCTGTGAATCCCTCTTTCCTTGTCTTTGCTTATGGTTTCCCAGGAGCTTTTTGTATATGAGTGATTTTGAAGTGCACATTGCAAACTTTTTTTTTTTTTTTTTTGGCCAGGTAGTGATTTTTCTCTCAACCTTTTTGTCTGTCTCCCCTCACTAGAATACAAACTCCTTCAGGGAAGGTATTTTTGCCAGGTTTTTTTTCCTGCTGTATCCCCAGTTCCTAGAATAGTGCTTGGTATTCGCTAGGTACTCAATAACTGCTTGCTGAGTGAATGAATGTTTATTTTCACTTAACAGTGTATCTTAGATATTGTGGCATATCAATTAATATAGATCTTCCTTGTTGCCTGCCTGCCTGCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTTTGAGACAGGGTTTCACCCCAGTTGCCCAGGCTAGAGTGCAGTGGCACTATCTTGCCTCACTGCAGTCTTGACCTCCCAGGCTCAGGTAATCCTCTCACCTCAGCCTCCCTAGTAGCTGGGACTATAGGTGTGTGCCACCACACCCGGCTAATTTTTTGTAGAGACAGGGTTTTGCCATGTTGCCCAGGCTGGTTGTTTGTTTGTTTTTGAGACAGAGTCTCAGTCTGTCGCCCAGGCTTGAGTGCAGTGGCACAGTCTCGGCTCACTGCATCCTCCGCCTCCTGGGTTCAAGCAAGTCTCCTGCCTCAGCCGCCTGAGTAGCTGGGACTACAGGCATGCACCACCATGCTCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAATTCCTGACCTCAAGTGATCCACCTGCCCCTGCCTCCCCAAGGGCTGGGATTACAGGCGTGAGCCACCACATCTGGCCCCTTCTTTGTTGCTTTTTATAATTGCATATAGTATTCCCTTATGGAGATTGTAGCATTATTTATTCATCCAATCTCCCATGAGGTGGTTTCCATTCTTTTGCTATTATAAATAGTACTGTAGAGCAGTGTCTTCACACATGTCATTTGCTCACATAAGTAAATGTTTATGTAGAATAACTTCTAGAAACCAAATTGCGAGTCAGAGGATGTATACATTATAAATTTGGATAGATATTGCCAAATTAATTGCCTTCAAAATATACCATACACCACAGACAATTTGAGTATGCCTGCTTCTTGACATCTTCACTAACTTACCCTAAGTCACTGTGACTTATCCCTAGTCATAGCATTTGACCAGTGACTTATCAAACACCCATCTTTGATAATATGTAAGGGAAAAATGCTGTCTTGTCTTAGTTTGCATTTATCTTCATGTGAGTGAAGTTGAGCATCTTTTTACATGTTTAAAAAACATTTGCATTTTATTTTCTGTGAAATGATGGTCATGTCCCTTGACCATCGTATTAGTCTGTTCTCATGTCACTATAAAGAAATACCCAAGACTGGGTAATTTATAAAGGAGAGAGGTTTAATTGACTCACAGTTCCACGGGGGTGGGGAAGCCTCAGGAAACTTACAATCATGGTGGAAGGGGAAGCAAGGACCTTCTTCACATGGTGGCAGGAGAGAGAAGTGCCAGCAAGGGAAATGCCAGACGCTTATAATACCATTAGATCTTGTGAGAACTCACTCACTATTATGAGAACAGCATGGGGGAAACTGCCTCCATGATTCAATCACCTCCTTCACTTGACAAGTGGGGATTGCAATTCAAAATGAGATTTGGGTGGGGAAACAGAGTCAAACCATATCAACCATTTTTTAAAAAGTTATTGGTCTTTTTCTTCTTGCTTTGTAGGAGCTCTCTCTATACATGGAGGAAATTAACTCTTTGTCCATCCTATCTGTTATGTGTATATTTTTTCCCTAGTTAGTCATATCCTTTGAGTTTGTTTGATATATTTTGCCATGTAATACATAAAGTAGTCACATTTATCAGTGTTTTCATTTGTGGCATCTGGGTTTTGGGGCATGCTTAGAAGAGTCTTCTCCACTCAAAGATTATTTTTTAAAACCTCTCCTGTCTTTATTTTATAGTTTCTCTTTTTTCATTTAAATTTTTGTCATGAATTTATTTTTGTATATAGTGTGAGGTAGGGAATCCAGTTAATTTTTTTCTGATAGCTCTCCAGTTTTGAATAGTCTGTTTTTCCATTCCTGTTTAAAATGCTACCTTTATTATATATTAAATTTCCCATTTTTATTTGTATCTATTTCTAGACTGTCTGTTCTGTTCCACTAACTATTCTTGCTAATGGCAGGGTTTTACATTGTTTCTCTCATAAAGTATGCTGGGCAAAGTGCAAAGTAGGCATCCTACATGTACTGCTATGGTAAAAATGACCAGAATGAGCAGATTGTACAGGAATGTGCTGTTATAG
Seq C2 exon
GAACCAGTGACATTTGAGGATGTGGCTGTGGACTTCACGCAGGAAGAGTGGCAGCAGTTGAATCCTGCTCAGAAGACCCTGCATAGGGATGTGATGCTGGAGACCTATAATCACCTGGTCTCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221994-ZNF630:NR_033730:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.2=20.0)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)